| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3239 |
|---|
| Symbol | |
|---|
| ID | 6286730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3383573 |
|---|
| End bp | 3384340 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642626815 |
|---|
| Product | protein of unknown function DUF140 |
|---|
| Protein accession | YP_001900793 |
|---|
| Protein GI | 187930306 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
|---|
| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.205423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCCA CCATCGGCCG CTTTGTTCTG GTGCTGATCA GCCGCTTCGG CTATGCCGCC
CGCACGTTGA TTTCGCTCAT TGGCGCTTCG GGCGACGTGC TCCGTCGCCC GCGCCTGGTG
ATCGAGCAAC TGCGCTTCAT CGGCAATGAT TCGTTCATCA TCATTGCTGT GTCGGGTCTG
TTTGTTGGCT TCGTGCTTGG TTTGCAGGGC TACAACACGC TTAACCGCTA CGGCTCCGAG
CAGGCGCTGG GTTTGCTGGT GGCGCTGTCG CTGGTGCGCG AGCTGGGGCC GGTGGTGACG
GCCCTGCTGT TTGCCGGTCG CGCCGGTACG TCGCTCACGG CCGAGATTGG CCTGATGAAA
GCCGGCGAGC AGCTGATCGC CATGGAAATG ATGGCGGTCG ATCCGCTGGC CCGCGTGCTG
GCGCCGCGTT TCTGGGCGGG CTTCATCGCC ATGCCGCTGC TGGCCGCGAT TTTCAGTGCG
GTGGGGATTC TGGGCGGATA CTTCGTCGGG GTCGGACTGA TTGGCGTGGA CCCCGGAGCG
TTCTGGTCGC AGATGCAGGC CGGCGTGGAT GTCATGGACG ACGTGCTCAA CGGCGTCATC
AAGAGTGTCG TGTTTGGTGT GGCGGTCACC TTCATTGCGC TGTATCAGGG TTATGAGGCG
AAGGCCACGC CGGAAGGCGT CTCGCGCGCG ACTACCCGGA CGGTGGTGAT CGCGTCGCTC
ACCGTGCTGG CGCTGGATTT CGTGCTGACG GCACTGATGT TCAGCTGA
|
|---|
| Protein sequence | MISTIGRFVL VLISRFGYAA RTLISLIGAS GDVLRRPRLV IEQLRFIGND SFIIIAVSGL
FVGFVLGLQG YNTLNRYGSE QALGLLVALS LVRELGPVVT ALLFAGRAGT SLTAEIGLMK
AGEQLIAMEM MAVDPLARVL APRFWAGFIA MPLLAAIFSA VGILGGYFVG VGLIGVDPGA
FWSQMQAGVD VMDDVLNGVI KSVVFGVAVT FIALYQGYEA KATPEGVSRA TTRTVVIASL
TVLALDFVLT ALMFS
|
|---|
| |