Gene Rpic_3201 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3201 
Symbol 
ID6287387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3349996 
End bp3351051 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content60% 
IMG OID642626776 
Productintegrase family protein 
Protein accessionYP_001900755 
Protein GI187930268 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.689071 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACCA TCGTCAAGAC GCCTTCCGGC ACGTGGAAGG CGGTCATTCG CAAGCTCGGC 
TGGCCGACCA CGGCCAAGAC CTTCCGCACC AAACGCGACG CGGAGGATTG GGCGCGCCGG
ACTGAGGATG AGATGGTCCG AGGTGTGTAT CTGTCCCGCG CACCATCTGA GAAGCTGACC
GTCGCTGGCG CGTTGAAGCG CTATATGGAG GAGGTTTCGG TCACGAAGAA GCCGACCACT
CAGCGCAGCG AGCGCTTTAC GGCTCAACAC TTGGAGGCCT TCTTCGGGAA GTATTCGATG
GCGGCCGTTA GCGCAGACCT GGTCGCCAAG TACCGCGATG CACGCTTGGC GGCGGGCAAG
TCGAACAACA CGGTTCGCAT TGAACTCGCG ATGCTGGGTC ATTTGTTTCG AACGGCGATT
CAAGAGTGGA GCATCGGCTT GACGTTCAAT CCGGTTGCCA ACATCCGCAA GCCTAGCCCG
GGGGCCGGGC GCGATCGTCG TCTTAGTCTG GACGAGCAGG CGCGTTTGTT CGCGGCTGTG
TCAGCTCACA GCAATCCGAT GCTGGGTTGG ATCGTGAGCT TGGCTGTGGA GACTGGTATG
CGCTCATCGG AGATCGCAAC GCTACGCCGT TCACAGGTCG ATCTGAACCG TCGAGTTGTG
ACCTTGCGGG ATACGAAAAA TGGCTCCGCG CGAGTAGTAC CGCTTACGCG TGCTGCCGCT
GATGTCTTGC AACTGGCCCT CGGCAATCCT ATTCGTCCAT TGGACTCAGA CCTCGTGTTC
TTTGGGGAGC CGGGGCGCGA CGGGAAACGA CGGCCCTATG TGTTCCAGAA GCTGTGGGCG
AGCATTGTTC GTGATATGGG CTTGGCCGAT CTTCATTTCC ACGACCTTCG CCATGAAGCC
GTGAGCCGTC TCGTTGAGGC GGGCCTGAGC GATCAGGAGG TAGCCGCCAT AAGCGGGCAC
AAGTCCATGC AGATGCTCAA GCGCTACACG CACCTACGGG CTGAGGACTT GGTGGAGAAG
CTTGACGCAG TCATTCTTGG CTGTGGTTCT GCCTAG
 
Protein sequence
MATIVKTPSG TWKAVIRKLG WPTTAKTFRT KRDAEDWARR TEDEMVRGVY LSRAPSEKLT 
VAGALKRYME EVSVTKKPTT QRSERFTAQH LEAFFGKYSM AAVSADLVAK YRDARLAAGK
SNNTVRIELA MLGHLFRTAI QEWSIGLTFN PVANIRKPSP GAGRDRRLSL DEQARLFAAV
SAHSNPMLGW IVSLAVETGM RSSEIATLRR SQVDLNRRVV TLRDTKNGSA RVVPLTRAAA
DVLQLALGNP IRPLDSDLVF FGEPGRDGKR RPYVFQKLWA SIVRDMGLAD LHFHDLRHEA
VSRLVEAGLS DQEVAAISGH KSMQMLKRYT HLRAEDLVEK LDAVILGCGS A