Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3175 |
Symbol | |
ID | 6286758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 3328351 |
End bp | 3330255 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642626750 |
Product | SMC domain protein |
Protein accession | YP_001900729 |
Protein GI | 187930242 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0609812 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000000447606 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAGCTCC AAACGATTCG GCTATCCAAC TTCCAGTCTT TCGGTGAGGC ACCAACCGAA GTCGTGCTTG AAGACATCAC CTACCTCATC GGGCCCAATG GATCGGGGAA AACAGCCGCG CTTCAGGCCT TGTGCCGGCT CTTTGCCTTC GATCCATCAC TGCGCCGGAT CCTGCGCTCT GACTTTTACG TCCCATTCAA TGAGGAAGCC CCGCCGGCTG AGCGTCAGCT CTGGGTAGAG GCTGACTTCC TGTTCCCAGA ACTCGGCGAA GACGAGGACA ACAGCACTGT TGCGCCTCAT TTTGGCCACA TGCGCCTCGA CGAAGTTGAT GGCACGCCGC GTGTGCGTTT TCGCCTCACC GCCACCATGG GGCTGGATGG AGACATAGAG GAAAGCTTGG TCTATGTGCT GGACATCAAT CCTGACGGCT CGCCATTGAC CACCGCACAG GTGCTCAGAT CTGAGCGCAA CCATATCCAC GTCCACTATC TGCCCGCCCG GCGTGACCCC GCGGATCACA TTGCCTACGG CGCCAATGCT TTGCTTGGGC GCATGCTGCG TGCAGTGAAC TGGGATGCAG AGCGGAGTGT CATCAAGGGC CTCACCGACC AAATCAGCGA CAGCTTGGCG GCCAACCCGT CAATCAATGC GTTCAGCACA AGCTTGAAAA CGGCATGGGG TGGTTTGCAC AAGGGCAGCT TCTTTGCCGA TCCGAAGCTC ACTTTTGTAG CGTCTGAGAT CGAGGCCTTG TTAAGGCACA TGTCGGTCTC TTTCACCCCT GGTCACGATG AGCAGCTGGT TGACTTCTCA CGACTGAGCG ACGGCCAGAA ATCGATGCTG TATCTGTCGC TCGTGTTGTC TTCACAGGCC ATCGGTCGAG CTGTCCTGGC TGCAGAAGAC AAGTCATTCG ACGCAGATAA GTTGCGCCCA CCCGTCTTCA CGGTGGTAGC GGTCGAAGAG CCAGAAAACA GCCTGTCGCC GCATTACCTT GGACGGATCG TCAATGCCCT CAACGGGATG ACCGGCAACG GCGACGCACA AGCGCTGATC GCCACCCATG CCCCGTCGAT GCTGCGGCGC GTCGACCCAG AACGTATCCG GTATCTGCGT CTAACCCAAG AACGAACATC GCGCGTCACG CATATCCAGC TGCCAGACAC CACAGATGAA GCTCACAAGT TTGTGCGTGA GGCCGTGCAG GCCTTTCCGG AAGTCTATTT CTCGCGACTC GTGGTACTTG GCGAGGGAGA CAGTGAAGAA ATCGTGTTGC CACGCCTCCT ACAGGCCAAA GGGGCACCGG TTGATGAGTC AGCAGTCTCG ATAGCGCCCT TGGGTGGACG TCACGTTAAT CATTTCTGGC GCCTACTGTC TGCCCTACAG ATTCCCTATC TGACGCTGCT TGATCTGGAT GTCGCCCGCT ACCAGGCCGG GTGGGGGCGA ATCAAGTACG CCAATAACCA GTTGGCAGCG TACGAGCCGA GTAAGGTACT TCCCGCAGAC CATGGCATTC CCAGTTGGAA TGATGCAACT CACAAAGTCC GAGCCTATGG GCACTACAAC ACTCTGCTCG AAGAGCGTGG TGTGTATTTC TCGTTCCCTA TGGACCTGGA TTTTTCGATG CTGCTCGCCT ACCCGGATGC CTACGGTGTG GAGAAGGAAA AGCCTGACGA GTCAACGATT AAGGCCGTGC TAGGGAAAAG CCATTACGAC GCAAGCCAAT ACAACGAGGA CGAACAAAAA CTGTTCGGCA CTTACCACCG TAGCTTCAAG CTTGGCAGCA AGCCGGCCGC GCACATTGAT GCGCTCGCCA AGCTCAGCGA TGCGGACCTG CTCGCGAACA TGCCCGAATC ACTTGGACGC TTGGCCGATG CCGTCATCGC CAAGCTCGCG GAGTTGCCGG AGTGA
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Protein sequence | MKLQTIRLSN FQSFGEAPTE VVLEDITYLI GPNGSGKTAA LQALCRLFAF DPSLRRILRS DFYVPFNEEA PPAERQLWVE ADFLFPELGE DEDNSTVAPH FGHMRLDEVD GTPRVRFRLT ATMGLDGDIE ESLVYVLDIN PDGSPLTTAQ VLRSERNHIH VHYLPARRDP ADHIAYGANA LLGRMLRAVN WDAERSVIKG LTDQISDSLA ANPSINAFST SLKTAWGGLH KGSFFADPKL TFVASEIEAL LRHMSVSFTP GHDEQLVDFS RLSDGQKSML YLSLVLSSQA IGRAVLAAED KSFDADKLRP PVFTVVAVEE PENSLSPHYL GRIVNALNGM TGNGDAQALI ATHAPSMLRR VDPERIRYLR LTQERTSRVT HIQLPDTTDE AHKFVREAVQ AFPEVYFSRL VVLGEGDSEE IVLPRLLQAK GAPVDESAVS IAPLGGRHVN HFWRLLSALQ IPYLTLLDLD VARYQAGWGR IKYANNQLAA YEPSKVLPAD HGIPSWNDAT HKVRAYGHYN TLLEERGVYF SFPMDLDFSM LLAYPDAYGV EKEKPDESTI KAVLGKSHYD ASQYNEDEQK LFGTYHRSFK LGSKPAAHID ALAKLSDADL LANMPESLGR LADAVIAKLA ELPE
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