| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3093 |
|---|
| Symbol | |
|---|
| ID | 6286068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 3230744 |
|---|
| End bp | 3232180 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642626664 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_001900648 |
|---|
| Protein GI | 187930161 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCG CGACCGTGAT GATGCGCGCC ACCGACGCCG CTGCCTGGAT GACCGGCGCC
CATCTGGCCG GCCCCGATGC GGCGATCCTG CGCGTGACGA CCGACAGCCG CGCCGTCCAG
CCGGGCGACC TGTTCGTCGC GCTGATCGGC GAGCGTTTCG ATGCGCACGA TTTCCTGCCC
GAGGTGGTGG CGCGTGGCGC TGCTGCCGTG CTGGTGTCGC GCGCACCGGC TGCCACCCTG
GATGTCACCA ATGTGGCCGT GCTGACTGTC GCCGACACGC GCTTCGGGCT CGGCCAGCTT
GCCGCCGGCT GGCGCCGCCA GTTCCCGATT CCCGTCGTCG CCGTGACGGG CAGCAACGGC
AAGACCACGG TCAAGGAGAT GATCTCCGCG ATCTTCGCGC AGGCCGTGGG TGAAGACGCC
CGCCTGGCGA CCGCCGGCAA TTTCAACAAC GACATCGGCC TGCCGCTCAC GCTGTTCCGC
CTGAACGCGC AACATAAGCT GGCCGTGCTT GAACTCGGCA TGAACCATCC GGGCGAAACG
GCTGTATTGG CCGCCATTGC CCAGCCGACC GTGGCGATGA TCAACAACGC GCAGCGCGAG
CACCAGGAAT TCATGGTCAG CGTGGAAGCG GTGGCTGAAG AACACGCCGC TGTGCTGGCC
GCGTTGCCGG CCAATGGCGT GGCGGTGTAT CCGCGCGATG CGGCCAACGG TGGCGAATAT
GCGCCGGTGT GGAAAGCCGC GGCGGGCTCG CGGCGCGTGC TCGATTTCGG TATGGATGCC
GGGGCCGTGA CGGGCACCGT GGTGGACACC GCCGACGGGC AACGCATTGA AGTGCAGGCT
CCGGGCCAGC GTTTCGTCAT CACCTTGCCG CTGCTGGGCC TGCATAACGC ACGCAATGCG
CTGGCGGCGA CGGCGTGCGC GCTGGCAGCC GGTGTCGCTC CCGAGGTGAT TGCGCAAGCG
CTGGGCAACT TTGCACCCGT CAAGGGGCGG TTGCAGCGCA AGCAGGGCAC GCATGGCGGC
CTGGTCATCG ACGACACGTA CAACGCGAAC CCGGATTCGA TGCGCGCCGC GATTGACGCG
CTTGTCACGC TGCCCGCGCC GCGCTGGCTG GTGCTGGGTG ACATGGGCGA GGTGGGCTCT
AAGGGGCCGG CATTCCACGA AGAGATCGGG GCCTACGCGC GCGCGCGCGG CATCGACGCA
GTGCTGGCAA CCGGCGAGCT TGCGCGCCAC ACGGTCGATG CCTTCGGCCC GGGCGCACAG
CATTTTGCGT CGGCGGAAGA CTTGATTGAA CACGGTGTGC CCGCCATTGC GCCGGCCGCG
ACGGTATTGG TGAAGGGATC GCGCTTCATG CGGATGGAAC GCATTGTGGA AGCGCTGGTC
TTGAAAGACC CGGTAGCGGA TTCGCCAGCC GGTTCCAACA CACAACAGCA GCATTAA
|
|---|
| Protein sequence | MSAATVMMRA TDAAAWMTGA HLAGPDAAIL RVTTDSRAVQ PGDLFVALIG ERFDAHDFLP
EVVARGAAAV LVSRAPAATL DVTNVAVLTV ADTRFGLGQL AAGWRRQFPI PVVAVTGSNG
KTTVKEMISA IFAQAVGEDA RLATAGNFNN DIGLPLTLFR LNAQHKLAVL ELGMNHPGET
AVLAAIAQPT VAMINNAQRE HQEFMVSVEA VAEEHAAVLA ALPANGVAVY PRDAANGGEY
APVWKAAAGS RRVLDFGMDA GAVTGTVVDT ADGQRIEVQA PGQRFVITLP LLGLHNARNA
LAATACALAA GVAPEVIAQA LGNFAPVKGR LQRKQGTHGG LVIDDTYNAN PDSMRAAIDA
LVTLPAPRWL VLGDMGEVGS KGPAFHEEIG AYARARGIDA VLATGELARH TVDAFGPGAQ
HFASAEDLIE HGVPAIAPAA TVLVKGSRFM RMERIVEALV LKDPVADSPA GSNTQQQH
|
|---|
| |