Gene Rpic_3088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3088 
SymbolmurC 
ID6286115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3224110 
End bp3225561 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content66% 
IMG OID642626659 
ProductUDP-N-acetylmuramate--L-alanine ligase 
Protein accessionYP_001900643 
Protein GI187930156 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0773] UDP-N-acetylmuramate-alanine ligase 
TIGRFAM ID[TIGR01082] UDP-N-acetylmuramate--alanine ligase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.47524 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCACA TCGTCAAGAA CATCCATTTT GTAGGCATCG GCGGGGCCGG CATGAGCGGC 
ATCGCGGAGG TGCTGCTGAA TCTGGGCTAC CGCGTGACGG GCTCGGATCT GGGCAGCAGC
GCGACCACGC AGCGTCTGGC AACGCTGGGC GCCACCATCA TGCAGGGCCA CGCGCCGGAA
CATGTGATCG GCGCCAATGC CGTGGTGGTC TCCACCGCCG TGCGCGGCGA CAACCCGGAA
GTGCTGGCCG CGCGCGCCAA GCGCATCCCC ATCGTGCCGC GTGCGGTGAT GCTGGCCGAG
CTGATGCGCC TGAAGCAGGG CATCGCGATT GCCGGCACGC ACGGCAAGAC GACGACGACC
AGCCTCGTCG CCTCCGTGCT GGCCGAAGGC GGTCTGGACC CGACGTTCGT GATCGGTGGC
CGTCTCAACT CCGCAGGCGC CAACGCGCGC CTCGGCACGG GCGATTTCAT CGTCGCCGAG
GCCGACGAAT CCGACGCGTC GTTCCTCAAC CTGTTCCCCG TGATCGAGGT CATCACCAAT
ATCGATGCCG ATCACATGGA CACCTACGGG CACGACTTCG CGCGCCTGAA GCAGGCGTTC
ATCGAGTTCA CGCAGCGGCT GCCGTTCTAC GGCATTGCCG TGCTGTGCGT GGACGACCCG
AACGTGCGCG AAATCCTGCC GTTCGTCTCC AAGCCGGTCG TGCGCTACGG GTTTGCCGAA
GATGCGCAAG TGCGTGCCGT CAATGCGCGC GCTGTCGATG GCCGCATGGA ATTCACCGTG
ATCCGCCAGC TCAACGGCCA TGCCGAGCCG CCGCTGTCGA TCACGCTCAA CCTGCCGGGC
CTGCACAACG TGCAGAACGC GCTGGCCGCC ATCGCCATCG CCACCGAACT GGAAGTGCCG
GACGAAGCCA TCGTCAAGGC GCTGGCCGAG TTCAACGGCG TGGGCCGCCG CTTCCAGCGC
TACGGCGAAG TGCCGACCGC TGACGGCAAA GGCCACTTCA CGCTCATCGA CGACTACGGC
CACCACCCTG TCGAAATGGC GGCAACGCTG GCTGCTGCGC GCGGTGCGTT CCCCGATCGC
CGCCTCGTGC TGTCGTTCCA GCCGCACCGC TTCACGCGCA CGCGCGATTG TTTCGAAGAC
TTTGTGAAAG TGCTCGGCAC GGTCGACGCG CTGCTGCTGG CCGAGGTGTA CGCCGCCGGC
GAGCCACCCA TCATCGCCGC TGACGGTCGC GCGCTGACGC GTGCGCTGCG CGTGGCCAAC
AAGATCGAGC CCGTATTCGT GGAGCAGATC GAAGACATGC CGCAAGCGAT CCTGGATGCG
GCGCAGGACG GCGACGTGGT CATCACCATG GGCGCTGGGT CGATCGGGCA GGTGCCCGGG
CAAGTGGTTG CGTTGCAGGC GCAGGCGCGC ACTGCAAACG TCGTGGATCT GAACGGAGGC
GCCGCAGCAT GA
 
Protein sequence
MKHIVKNIHF VGIGGAGMSG IAEVLLNLGY RVTGSDLGSS ATTQRLATLG ATIMQGHAPE 
HVIGANAVVV STAVRGDNPE VLAARAKRIP IVPRAVMLAE LMRLKQGIAI AGTHGKTTTT
SLVASVLAEG GLDPTFVIGG RLNSAGANAR LGTGDFIVAE ADESDASFLN LFPVIEVITN
IDADHMDTYG HDFARLKQAF IEFTQRLPFY GIAVLCVDDP NVREILPFVS KPVVRYGFAE
DAQVRAVNAR AVDGRMEFTV IRQLNGHAEP PLSITLNLPG LHNVQNALAA IAIATELEVP
DEAIVKALAE FNGVGRRFQR YGEVPTADGK GHFTLIDDYG HHPVEMAATL AAARGAFPDR
RLVLSFQPHR FTRTRDCFED FVKVLGTVDA LLLAEVYAAG EPPIIAADGR ALTRALRVAN
KIEPVFVEQI EDMPQAILDA AQDGDVVITM GAGSIGQVPG QVVALQAQAR TANVVDLNGG
AAA