Gene Rpic_3072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3072 
Symbol 
ID6286996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3207632 
End bp3208513 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content66% 
IMG OID642626643 
ProductPrepilin peptidase 
Protein accessionYP_001900627 
Protein GI187930140 
COG category[N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.373458 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAGA TGTTCGTCAT CCCCACGTTG GCGCAACTGC CGGCGTGGTT TGTAGTTGCC 
GCAGGCGGGC TGGTCGGCTT GCTGGTCGGC AGCTTCCTGA ACGTGGTGAT CCACCGTCTG
CCGCGCATGA TCGAGCGGGA GGAAGCCAAC TACATCGCAG AACTGCGTGA TGAGCCGCTG
CCTCACCCCG ACGCATACAA CCTGGTCGTG CCGCGCTCGG CGTGCCCGTC GTGTGGTCAT
CAGATCAAAG CGATCGAGAA CATCCCCGTG TTGAGCTGGC TTGCGCTGCA CGGCCGGTGC
AGTGCCTGCA AGGCGCCCAT CTCGTGGCGC TATCCCGCTG TGGAACTGGT CACTGGTCTG
CTGACCGCGG CCTGCCTGTG GCACTTCGGC CCGACGTGGG TGGCGGTCGC ATCGGCGGTC
CTGCTGTGGT TCCTGATCGC CGGCACCATG ATCGACGCCG ATACGCAACT GTTGCCCGAT
GCCATCACCC AGCCGCTGCT GTGGCTCGGG CTGGGCGTGA ACCTGTTCGG CATGTTTGCG
CACTTGCAGG ACGCGGTCGT CGGCGCGATG GCCGGTTACC TGTTCCTGTG GTCGATCTAT
TGGGCCTACA AGCTGCTGCG CGGCCGCGAA GGCATGGGCT ACGGCGACTT CAAGCTGATG
GCCGCACTCG GCGCGTGGTT CGGCTGGCAG GCGCTGCCGT TGCTGGTGCT GCTCTCGTCC
GTCGTGGGAC TGGTGTTTGG GCTCGTGCGC ATTGCGCGCG GCGCGACGAG CGAATCGCCG
TTCTCGTTCG GACCGTTCAT TGCCGGGGCC GGCGTGATCG CATTGCTGGC CGGCCCGCAG
CTGCTCATGA TGGCAGGCCT AGGCCCGCTC CTTGCGCCAT AA
 
Protein sequence
MPEMFVIPTL AQLPAWFVVA AGGLVGLLVG SFLNVVIHRL PRMIEREEAN YIAELRDEPL 
PHPDAYNLVV PRSACPSCGH QIKAIENIPV LSWLALHGRC SACKAPISWR YPAVELVTGL
LTAACLWHFG PTWVAVASAV LLWFLIAGTM IDADTQLLPD AITQPLLWLG LGVNLFGMFA
HLQDAVVGAM AGYLFLWSIY WAYKLLRGRE GMGYGDFKLM AALGAWFGWQ ALPLLVLLSS
VVGLVFGLVR IARGATSESP FSFGPFIAGA GVIALLAGPQ LLMMAGLGPL LAP