Gene Rpic_3026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3026 
Symbol 
ID6288415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3154158 
End bp3155543 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content62% 
IMG OID642626596 
ProductUDP-N-acetylmuramate 
Protein accessionYP_001900581 
Protein GI187930094 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0773] UDP-N-acetylmuramate-alanine ligase 
TIGRFAM ID[TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATATCC ACATCCTTGG AATCTGCGGC ACCTTCATGG GCGGCATTGC CCTGATCGCC 
CGTCAGGCCG GCCACCGCGT CACCGGCTGC GACGCCAACG TCTACCCTCC GATGAGCACC
CAGCTCGAAG CGCAAGGCAT CGAGCTGATC GAAGGCTTTG ACCCCGAACA GCTCTCCATC
GGCGCCGATC TTTACGTGAT CGGCAACGTG ATCTCCCGTG GCAACGCTCT CATGGAAGCC
ATCCTGGATC GCAATTTGCC CTACATCTCC GGTCCTCAAT GGCTCGGCGA CAACGTACTA
CGCCAGAAGT GGGTGCTTGC CGTGGCAGGC ACACACGGCA AGACGACCAC GACATCGATG
CTCGCGTGGA TCCTGCAGGA TGCCGGCTAC AACCCGGGCT TCCTGGTGGG CGGCGTGCCA
CGCAACTTCG GGCTGTCGGC GCGCCTGACG GAATCCGACT TCTTCGTGAT TGAAGCGGAC
GAGTACGACA CGGCCTTCTT CGACAAGCGC AGCAAGTTCG TTCATTACCG CCCCCGTACA
GCCATATTGA ACAACCTCGA ATTCGATCAC GCCGACATCT TTCCCGATCT TGCCGCGATC
GAAACCCAAT TTCATCATCT GGTGCGCACC GTGCCCGGTC AGGGCCGCCT CCTGGTCAAT
GGTCGGGAAG ATAGCCTGAA GCGTGTACTT GAGCGCGGAT GTTGGTCGGA AGTCGAGCAG
TTCGGGGCGG AGGGCAACCT CGGCTGGGAA GTCGAAAACC TCGCCGATGA CGATAGCTTC
GATGTCGTTT TCCAGGGCCA AACGCAGGGC AGGGTCCGGT GGGCACTTCA GGGCGACCAC
AACCGCATGA ACGCGCTGGC CGCCATTGCC GCCGCCCGCC ACGTGGGCGT GCCGCCTGCC
CAAGCCATTG AAAGCCTGGC CCGTTTCGAA AATGTGAAAC GGCGCATGGA AGTGCGTGGC
ACCGTGAATG ACGTGACTGT GTACGATGAT TTTGCCCATC ACCCGACGGC GATTCGCACC
ACCATCGAGG GCCTGCGCCG TCGTGTCGGC AAGGGGCGCA TCCTGGCAGT GCTGGAGCCA
CGGTCAAACA CCATGAAGTT GGGCGTGATG AAACTGGCCC TTCCCGACAG CCTGTCCGGC
GCTGAACAGA TCTTCGCTTA TGGCGCAGCC AATGGCCGCG ACGCCCTCGG CTGGGATTTG
GCTGGGGCGC TGGCCCCGCT GGGGGAGCGC GCGAAGACGT TTTCTGATCT GAGCGCATTA
ATCGAAGCCG TCACAGCTGC CGCCCGCCCG GGCGACCATG TGCTTGTCAT GAGCAACGGC
GGCTTCGGAG GCGTACATCA GAAGCTGCTG GACGCCTTGG CCGAACGCGC CGAGACAGCG
AATTGA
 
Protein sequence
MHIHILGICG TFMGGIALIA RQAGHRVTGC DANVYPPMST QLEAQGIELI EGFDPEQLSI 
GADLYVIGNV ISRGNALMEA ILDRNLPYIS GPQWLGDNVL RQKWVLAVAG THGKTTTTSM
LAWILQDAGY NPGFLVGGVP RNFGLSARLT ESDFFVIEAD EYDTAFFDKR SKFVHYRPRT
AILNNLEFDH ADIFPDLAAI ETQFHHLVRT VPGQGRLLVN GREDSLKRVL ERGCWSEVEQ
FGAEGNLGWE VENLADDDSF DVVFQGQTQG RVRWALQGDH NRMNALAAIA AARHVGVPPA
QAIESLARFE NVKRRMEVRG TVNDVTVYDD FAHHPTAIRT TIEGLRRRVG KGRILAVLEP
RSNTMKLGVM KLALPDSLSG AEQIFAYGAA NGRDALGWDL AGALAPLGER AKTFSDLSAL
IEAVTAAARP GDHVLVMSNG GFGGVHQKLL DALAERAETA N