Gene Rpic_3021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3021 
SymbolaroE 
ID6288656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp3148807 
End bp3149724 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content68% 
IMG OID642626591 
Productshikimate 5-dehydrogenase 
Protein accessionYP_001900576 
Protein GI187930089 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.332302 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTCGT CGTTTCAAGA GGCCATCCTC GCCGCCGCGA GCGCGCCGCC CACAGATCGC 
TATGGCGTGA TCGGCAACCC GATCGCGCAC AGCAAGTCGC CCATCATCCA TGCCGCGTTT
GCGCAGCAGA CCGGGCAGCG CATCCGCTAC GACCGTATCT ACGCCGAGTT GATCGCGTTT
GACGAAACCG TGATGACCTT CGTGCGTGAA GGCGGACGCG GGCTCAACGT GACGGTGCCG
TTCAAGCTCG ATGCGTATGC CATGTCGACG TCGTTGTCGC TGCGGGCGGA ATCGGCCGGC
GCGGTCAACA CGCTCAAGTT CGATGGTGAA GAGATTTTTG GCGACAACAC CGACGGCGTC
GGCCTGATGC GCGACATCAC CCACAACATC GGCAACGCGC TCGAAGGCGA GCGCGTGCTG
CTACTGGGCG CGGGTGGTGC GGCGCGCGGC GTGCTGCTGC CGCTGCTGGA GCACAAGCCC
GCGCGCGTGT TCCTGGCCAA CCGCACGGCC GATCGCGCCA ACAGGCTGGT CGAGCGCTTC
GAGGTCTCGG CCAAGCTGCA CGAGGTTGAA CTCGTGGGCG GGGGCTATGA CGAGCTTGCT
GCGGACGACG TTTTCGACGT CATCATCAAC GCCACGGCGA GCAGCCTGCA GGCCGAAGTG
CCGCCGATCC CGACCACCGT GTTCGGCCCC AACGCGCTGG CCTACGACAT GATGTACGGC
CCGCGTCCGA CGGTGTTCAT GGAGTTCGCC CGGCGCAACG GCGCCCGCGC ATGGGACGGC
CTGGGCATGC TGGTGGAGCA GGCCGCGGAA TCGTTCTTCG TCTGGCGCGG CGTGCGCCCG
GACACCGCGC CGGTGCTGCT CGCCATGCGC GAAGGGCTGC AGGGCGAAGC CGCGGTCGCG
GCGCGCGCGC CTCGCTGA
 
Protein sequence
MPSSFQEAIL AAASAPPTDR YGVIGNPIAH SKSPIIHAAF AQQTGQRIRY DRIYAELIAF 
DETVMTFVRE GGRGLNVTVP FKLDAYAMST SLSLRAESAG AVNTLKFDGE EIFGDNTDGV
GLMRDITHNI GNALEGERVL LLGAGGAARG VLLPLLEHKP ARVFLANRTA DRANRLVERF
EVSAKLHEVE LVGGGYDELA ADDVFDVIIN ATASSLQAEV PPIPTTVFGP NALAYDMMYG
PRPTVFMEFA RRNGARAWDG LGMLVEQAAE SFFVWRGVRP DTAPVLLAMR EGLQGEAAVA
ARAPR