Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_2959 |
Symbol | secD |
ID | 6287487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 3081667 |
End bp | 3083556 |
Gene Length | 1890 bp |
Protein Length | 629 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642626529 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001900514 |
Protein GI | 187930027 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGCT ATCCGCTCTG GAAATACCTT GTGATCCTGG TGGCGCTTGC CATTGGGTTC CTCTATACGC TGCCGAACTT CTTCGGTGAG GCGCCTGCTG TGCAGGTGTC TTCGGGCAAG GCCACCGTCA AGGTCGACCT GAACGTGCAA AAGCAGGTCG AGAGCCTGCT GGCTGCGGCC AGCATTCAGC CCGACGGCGT GTTCTTCGAC AACAACGGCA CCTCCGCCAG CGTGCGCGTG CGTTTTGCCG ACACCGACAC GCAGCTCAAG GCCAAGGACA TCCTGGCCCG CGGCCTGAAC ACCGATCAAG CCGATCCGAC CTACATCGTG GCGCTGAACC TGCTGCCCGG TTCGCCGCGC TGGTTGAGCG GGGCACCGTT CTTTGCCAAG CCCATGTTCC TGGGCCTCGA TTTGCGCGGT GGCGTGCACT TCCTGCTGCA GGTCGACATG AACGGCGCCG TGACGAAGAA GCTCGACTCG CTGGCCGGCG ACATCCGCAC GCAACTGCGT GACAAGGGCA TTCGACACAG CGGCATCGAC CGCAACGGCA ACACCATCAC GATCAAGTTC AGCACCCCGG ACGACGCCGA CCGCGCCCGC ACGCTGCTGG CCGATTCGAC CCGCGAACTG GCCTACACCG TGGACAAGAG CGCCGACGGC GCCACGCTCA CCGGCACCTT CACCGCCGCT GCGATGAAGG AAGTGCAGGA CAACGCAGTC AAGCAGAACA TCGTCACGCT GCATAACCGA GTGAACGAAC TCGGCGTGGC CGAGCCGGTG ATCCAACAGC AGGGCCCGGA CCGCATCGTT GTGCAATTGC CCGGCGTGCA GGACACCGCC AAGGCCAAGG ACATCATCGG CCGCACCGCT ACGCTGGAAG CGCGCCTGGC CGATCCGAAC GCGCCGCTCG CGCCCCGCCC CGGCGACCCG GTACCGCTGG GCGACGAGCT GTTCACGCAA GGGCGCAGCG CTCCCGTCCT GCTGCAGAAG CAGGTGATCT TCACGGGCGA TCGCATCACC AGCGCCTCGG CGGGCTTCGA CCAAAACCAC AATTCGTCGG TCGACATCAC GCTCGACGGC CAGGGCGGCC GCATGCTGCG CGATGTCTCG CGTGACAACA TCGGCAAGCG CATGGGTATC GTGCTCTTTG AAAAGGGCAA GGGCGAAGTG CTGACGGTGG CGACCATCCA GTCCGAACTG GGCTCGCGCT TCCAGATCAC CGGCATGGGC TCGACCGAGG CGGCTTCCGA CCTGGCGCTG CTGCTGCGTG CAGGCTCGCT GGCCGCGCCA ATGGAAATCA TCGAAGAACG CACCATCGGC CCATCGCTGG GTGCCGATAA CATCAAGAAA GGCTTCGATT CGGCGCTGTA CGGCTTCCTC GCCATCTCGG TGTTCATGGT GCTGTACTAC ATGCTGTTCG GCGCGTTCTC GGTGGCGGCC CTCGGCGTCA ACGTGTTCCT GCTGATCGCA CTGCTCTCCA TGCTGCAGGC CACGCTCACG TTGCCGGGTA TCGCGGCCAT CGCACTGGCG CTCGGTATGG CCATTGACGC GAACGTGCTG ATCAACGAGC GCGTGCGTGA AGAGCTGCGC AGCGGCGCGT CGGCACAGAT GGCCATCGCC GCCGGCTTTG ACCGTGCCTG GGCGACCATC CTCGATTCGA ACGTGACGAC GCTCATCGCC GGTCTGGCGC TGATCGCCTT CGGTTCGGGC CCGGTACGCG GCTTCGCGAT CGTGCACTGC CTGGGGATCG GCACGTCCAT GTTCTCGGCG GTGTTCTTCA ACCGCGGTCT CGTGAACCTC TGGTACGGCC GCAAGAAGAA GCTCCAGAGC GTCGCCATCG GGCAGGTGTG GAAGCCGGGC AATACGAACG CGGAATCGCC CGCCAAGTAA
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Protein sequence | MNRYPLWKYL VILVALAIGF LYTLPNFFGE APAVQVSSGK ATVKVDLNVQ KQVESLLAAA SIQPDGVFFD NNGTSASVRV RFADTDTQLK AKDILARGLN TDQADPTYIV ALNLLPGSPR WLSGAPFFAK PMFLGLDLRG GVHFLLQVDM NGAVTKKLDS LAGDIRTQLR DKGIRHSGID RNGNTITIKF STPDDADRAR TLLADSTREL AYTVDKSADG ATLTGTFTAA AMKEVQDNAV KQNIVTLHNR VNELGVAEPV IQQQGPDRIV VQLPGVQDTA KAKDIIGRTA TLEARLADPN APLAPRPGDP VPLGDELFTQ GRSAPVLLQK QVIFTGDRIT SASAGFDQNH NSSVDITLDG QGGRMLRDVS RDNIGKRMGI VLFEKGKGEV LTVATIQSEL GSRFQITGMG STEAASDLAL LLRAGSLAAP MEIIEERTIG PSLGADNIKK GFDSALYGFL AISVFMVLYY MLFGAFSVAA LGVNVFLLIA LLSMLQATLT LPGIAAIALA LGMAIDANVL INERVREELR SGASAQMAIA AGFDRAWATI LDSNVTTLIA GLALIAFGSG PVRGFAIVHC LGIGTSMFSA VFFNRGLVNL WYGRKKKLQS VAIGQVWKPG NTNAESPAK
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