Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_2667 |
Symbol | |
ID | 6288606 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 2780002 |
End bp | 2781885 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642626238 |
Product | TonB-dependent receptor |
Protein accession | YP_001900225 |
Protein GI | 187929738 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0986558 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGCGC TTGCCAGCGC ACGATTGGGG GTTGTTGCGG GGGCCATGGC AGGTGCGGTT GCGCCGGCCT GGGCACAAAG CAATACACAA GTAGCCAGCA CGCCCGTCGG CGAGCTGAAT CCGACAGTGG TGACCGCCTC GCGCAGCGAG CAGCCCCTGT CCGATGCACT GCCGCATACG ACGGTCATCA GCCGCGCCGA TATCGAGCGC TCGCAGGCGC CGGACGCCGT GACGCTGCTG CGTCGCGAGG CCGGCATCGA AATCGCGCAG AGCGGCGGCC CAGGCACCAA CGCCAGCCTT TTCATGCGCG GCGCCGGTTC CAATCAGACG CTGGTTCTGA TTGACGGTGT GCGTGTGGCG TCCGGCACCT CGGGCGGCGC GCAGATCGCG CAATTGATGG CCGATCAGAT CGATCACATC GAGGTTGTGC GCGGCAACGT GTCTGCGCTG TACGGCTCCG ATGCGATTGG CGGCGTGGTG CAGATTTTCA CGCGCAACGG CCGTGGCCAT GGCCCGCTGG CCAATGCAGA GATCGAGTAC GGCGCCCGCA ATACCAAGCG CGCGCAGGCT GGCATCAGCG GCTCGCTGGG CGAGAACGGC GATACATCGT TCGCGGTGTC GGTGTCGGAA TTCAAGACCA ACGGCTTCTC GACCATCAAC CCGCAGCAGG CGCCCAAGGC CAACCCGAAC GACAACCCGT ACACGAACAA GAGCGTGTCG GCGCAGTTGT CGCATCGCTT CTCGGCAGAT TGGCAAGCGG GCCTGACGTA CTTCCAGACC TGGGGCGATG TCAGTTACGA CAACGCCTTC GGCAAGCCGA CCGATGACAA CGTCGCACAC AACGTAGTGC GCTCGATGTC GGCCTACGTG GACGGCAAGG TAACGCAGGA TTGGAAGACG CGCCTGACGC TGTCGCAGGG CGATGACCGC AGCTTGAATT ACACGAACGG CGTGTTGCAG GTGCCGGCGC GCTTCAACAC ACGCAATCAG ACGGCGAGCT GGCAGAACGA CTGGGCCTTC ATGCCCGATC AGCTGCTCAA GGTGGGCCTG GAGCATCTGC AGACCAGTAT CGACAGCGAT GCCTACAACG TGCCCACGCG CAACGTTGAT TCCGGCTACA TCGGTTACGA AGGCAAGTTT GGCCCGCACC AGTTGCAGCT GAACCTGCGC CGCGACCGCT ACTCGGACTT CGGTGGCGCC AACAGCTACT ACGCCGGCTA CGGCTTCGCA TTCAACCCGC AATGGAAGGC GGTTGCGAGT GTGAGCAATG CCTTCCGCGC ACCCAGCTTC AACGAGTTGT ACTACCCGTT CTTCGGCAAC CCGAACGTGC AGCCCGAGAA GGCGCGCTCG GTGGAAGGCG GCGTGGAATA CAGCGGCGCG ATCGGCCTGG TGCGCGTGAC GGTGTTCGAG ACGGACTACA GCAACCTGAT CACGGCGGTA TGCGATGCAG ATTTCAATTG CTCGGCAGCC AACGTCAACC GCGCACGCGT GAACGGGCTG GAGACGTCGT ATCGGGGTTC GATCTATGGC GTGGATCTGC GTGCGAGCTT TACCATGCAG AACCCGCAGG ACCTGTCGGC CAACCAGTTG CTCTCGCGCC GCGCACGGCA CTTCGGCAGC GTCTCGGCGT ACAAGACGTT CGGGCCGTTC TCGGCGGGCG TGGAGTGGAA TGCAGCGGGC GACCGCCAGG ATTCGACCAA GACGCTCGGT GGCTATGGCC TGCTGAACCT GGTCGGCCGC TACCAGATCA CGCCTGACTG GGCAGTGTCG GCACGTGTTG AAAACGTGAC GAACAAGAAC TACCAGTTGA TCTATCCGTA CAACACGGCG TCGCGTGGGG TGTTCTTCAC GCTGTCGTGG CAACAGCACG AACCGAAGCG ATGA
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Protein sequence | MRALASARLG VVAGAMAGAV APAWAQSNTQ VASTPVGELN PTVVTASRSE QPLSDALPHT TVISRADIER SQAPDAVTLL RREAGIEIAQ SGGPGTNASL FMRGAGSNQT LVLIDGVRVA SGTSGGAQIA QLMADQIDHI EVVRGNVSAL YGSDAIGGVV QIFTRNGRGH GPLANAEIEY GARNTKRAQA GISGSLGENG DTSFAVSVSE FKTNGFSTIN PQQAPKANPN DNPYTNKSVS AQLSHRFSAD WQAGLTYFQT WGDVSYDNAF GKPTDDNVAH NVVRSMSAYV DGKVTQDWKT RLTLSQGDDR SLNYTNGVLQ VPARFNTRNQ TASWQNDWAF MPDQLLKVGL EHLQTSIDSD AYNVPTRNVD SGYIGYEGKF GPHQLQLNLR RDRYSDFGGA NSYYAGYGFA FNPQWKAVAS VSNAFRAPSF NELYYPFFGN PNVQPEKARS VEGGVEYSGA IGLVRVTVFE TDYSNLITAV CDADFNCSAA NVNRARVNGL ETSYRGSIYG VDLRASFTMQ NPQDLSANQL LSRRARHFGS VSAYKTFGPF SAGVEWNAAG DRQDSTKTLG GYGLLNLVGR YQITPDWAVS ARVENVTNKN YQLIYPYNTA SRGVFFTLSW QQHEPKR
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