Gene Rpic_2667 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2667 
Symbol 
ID6288606 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2780002 
End bp2781885 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content63% 
IMG OID642626238 
ProductTonB-dependent receptor 
Protein accessionYP_001900225 
Protein GI187929738 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4206] Outer membrane cobalamin receptor protein 
TIGRFAM ID[TIGR01779] TonB-dependent vitamin B12 receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0986558 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGCGC TTGCCAGCGC ACGATTGGGG GTTGTTGCGG GGGCCATGGC AGGTGCGGTT 
GCGCCGGCCT GGGCACAAAG CAATACACAA GTAGCCAGCA CGCCCGTCGG CGAGCTGAAT
CCGACAGTGG TGACCGCCTC GCGCAGCGAG CAGCCCCTGT CCGATGCACT GCCGCATACG
ACGGTCATCA GCCGCGCCGA TATCGAGCGC TCGCAGGCGC CGGACGCCGT GACGCTGCTG
CGTCGCGAGG CCGGCATCGA AATCGCGCAG AGCGGCGGCC CAGGCACCAA CGCCAGCCTT
TTCATGCGCG GCGCCGGTTC CAATCAGACG CTGGTTCTGA TTGACGGTGT GCGTGTGGCG
TCCGGCACCT CGGGCGGCGC GCAGATCGCG CAATTGATGG CCGATCAGAT CGATCACATC
GAGGTTGTGC GCGGCAACGT GTCTGCGCTG TACGGCTCCG ATGCGATTGG CGGCGTGGTG
CAGATTTTCA CGCGCAACGG CCGTGGCCAT GGCCCGCTGG CCAATGCAGA GATCGAGTAC
GGCGCCCGCA ATACCAAGCG CGCGCAGGCT GGCATCAGCG GCTCGCTGGG CGAGAACGGC
GATACATCGT TCGCGGTGTC GGTGTCGGAA TTCAAGACCA ACGGCTTCTC GACCATCAAC
CCGCAGCAGG CGCCCAAGGC CAACCCGAAC GACAACCCGT ACACGAACAA GAGCGTGTCG
GCGCAGTTGT CGCATCGCTT CTCGGCAGAT TGGCAAGCGG GCCTGACGTA CTTCCAGACC
TGGGGCGATG TCAGTTACGA CAACGCCTTC GGCAAGCCGA CCGATGACAA CGTCGCACAC
AACGTAGTGC GCTCGATGTC GGCCTACGTG GACGGCAAGG TAACGCAGGA TTGGAAGACG
CGCCTGACGC TGTCGCAGGG CGATGACCGC AGCTTGAATT ACACGAACGG CGTGTTGCAG
GTGCCGGCGC GCTTCAACAC ACGCAATCAG ACGGCGAGCT GGCAGAACGA CTGGGCCTTC
ATGCCCGATC AGCTGCTCAA GGTGGGCCTG GAGCATCTGC AGACCAGTAT CGACAGCGAT
GCCTACAACG TGCCCACGCG CAACGTTGAT TCCGGCTACA TCGGTTACGA AGGCAAGTTT
GGCCCGCACC AGTTGCAGCT GAACCTGCGC CGCGACCGCT ACTCGGACTT CGGTGGCGCC
AACAGCTACT ACGCCGGCTA CGGCTTCGCA TTCAACCCGC AATGGAAGGC GGTTGCGAGT
GTGAGCAATG CCTTCCGCGC ACCCAGCTTC AACGAGTTGT ACTACCCGTT CTTCGGCAAC
CCGAACGTGC AGCCCGAGAA GGCGCGCTCG GTGGAAGGCG GCGTGGAATA CAGCGGCGCG
ATCGGCCTGG TGCGCGTGAC GGTGTTCGAG ACGGACTACA GCAACCTGAT CACGGCGGTA
TGCGATGCAG ATTTCAATTG CTCGGCAGCC AACGTCAACC GCGCACGCGT GAACGGGCTG
GAGACGTCGT ATCGGGGTTC GATCTATGGC GTGGATCTGC GTGCGAGCTT TACCATGCAG
AACCCGCAGG ACCTGTCGGC CAACCAGTTG CTCTCGCGCC GCGCACGGCA CTTCGGCAGC
GTCTCGGCGT ACAAGACGTT CGGGCCGTTC TCGGCGGGCG TGGAGTGGAA TGCAGCGGGC
GACCGCCAGG ATTCGACCAA GACGCTCGGT GGCTATGGCC TGCTGAACCT GGTCGGCCGC
TACCAGATCA CGCCTGACTG GGCAGTGTCG GCACGTGTTG AAAACGTGAC GAACAAGAAC
TACCAGTTGA TCTATCCGTA CAACACGGCG TCGCGTGGGG TGTTCTTCAC GCTGTCGTGG
CAACAGCACG AACCGAAGCG ATGA
 
Protein sequence
MRALASARLG VVAGAMAGAV APAWAQSNTQ VASTPVGELN PTVVTASRSE QPLSDALPHT 
TVISRADIER SQAPDAVTLL RREAGIEIAQ SGGPGTNASL FMRGAGSNQT LVLIDGVRVA
SGTSGGAQIA QLMADQIDHI EVVRGNVSAL YGSDAIGGVV QIFTRNGRGH GPLANAEIEY
GARNTKRAQA GISGSLGENG DTSFAVSVSE FKTNGFSTIN PQQAPKANPN DNPYTNKSVS
AQLSHRFSAD WQAGLTYFQT WGDVSYDNAF GKPTDDNVAH NVVRSMSAYV DGKVTQDWKT
RLTLSQGDDR SLNYTNGVLQ VPARFNTRNQ TASWQNDWAF MPDQLLKVGL EHLQTSIDSD
AYNVPTRNVD SGYIGYEGKF GPHQLQLNLR RDRYSDFGGA NSYYAGYGFA FNPQWKAVAS
VSNAFRAPSF NELYYPFFGN PNVQPEKARS VEGGVEYSGA IGLVRVTVFE TDYSNLITAV
CDADFNCSAA NVNRARVNGL ETSYRGSIYG VDLRASFTMQ NPQDLSANQL LSRRARHFGS
VSAYKTFGPF SAGVEWNAAG DRQDSTKTLG GYGLLNLVGR YQITPDWAVS ARVENVTNKN
YQLIYPYNTA SRGVFFTLSW QQHEPKR