Gene Rpic_2413 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2413 
Symbol 
ID6287917 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2511100 
End bp2514411 
Gene Length3312 bp 
Protein Length1103 aa 
Translation table11 
GC content67% 
IMG OID642625990 
ProductCarbamoyl-phosphate synthase L chain ATP-binding 
Protein accessionYP_001899979 
Protein GI187929492 
COG category[C] Energy production and conversion
[I] Lipid transport and metabolism 
COG ID[COG1038] Pyruvate carboxylase
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit
[COG4799] Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.370889 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTTTC GCAAACTGCT GATCGCCAAT CGCGGCGAGA TCGCCATTCG CATTGCCCGC 
GCAGCCGCCA CGATGGGCTT GCCCTCCGTC GCCATCTATT CCGAGGACGA TCGCGACGCG
CTGCATCCAC TACGCGCAGA TGAAGCCGTG CCCTTGTCCG GGACCGGCCC ACGCGCATAC
CTTGACGGCG CGGCCATCCT CGCCGCTGCA CGCGCCGTCG GGGCCGAAGC CGTCCATCCC
GGCTATGGGT TCCTAAGCGA GAACGCCGCG TTCGCGCGCC AGTGCGCCCA GGCCGGCGTG
CAGTTCATCG GGCCGTCACC GCGTGTGCTC GACCTCTTCG GCGACAAGGC ACGCGCTCGG
GCCCTTGCAC ACGAGGCCGG CATTCCCGTC GTCAGCGGCA CGCAAGGTGC GACCACGCTG
GAAGAGGCGC GCGCCTTCTT CGCCGCGCTG CCGCCCTCGC ACGGCATGAT GATCAAGGCC
GTATCCGGCG GCGGCGGACG CGGCATGCGC GCCGTGCACG ATGCGCAGGC GATTGCCGAC
GCGTACGCGC GCTGCGTATC TGAAGCGACC GCCGCGGGTG GTGGCAGCGA CGTCTATGTG
GAAGCGCTGG TGCCCGCCCC GCGCCATATC GAAATCCAGA TCGTCGCAGA CGCGCACGGC
CACGTTACGC ACCTCGGCGA GCGTGAATGC AGCCTGCAGC GCCGTCACCA GAAACTGATC
GAGATCGCGC CCAGCCCCGC GTTGGACGAT GCACTGCGCG CACGCATTGC CGAGGCTGCC
GTCACGCTCG CCAAGGCGGC AGGCTACAGC GGCATCGGCA CCTTCGAATT CCTCGTGGAA
GGCGCGGGCA CGCCGCACGC CACCTTCTAC TTCATGGAGG CCAACCCACG CGTGCAAGTC
GAACACACGG TCACGGAAAT GGTGACGGGT ATCGACCTGG TCGTGACCCA GCTGGCGCTG
GCGCAGGGTG CGTCGCTCGC AGATGTCGGG CTTGCTCAGC CGATCGCGCC GCGCGGCCAC
GCCGTGCAGG TGCGCATCAA TGCGGAGACC CTCGATGCAA GCGGTCAGCC GCACCCGTCC
ACCGGCATGC TCACCGCCTT CGAGCCGCCC AACGGCCCCG GCGTGCGCGT CGACACCTGC
GGTTATGCGG GCTACCGTCC GAACCCGCGC TTCGACTCGC TGCTGGCCAA ATTGATCGTC
CACGCGCCGC ACGGCACGTA TGCGCAGACG CTGACACAGA CGTACCGCGC GCTGTGCGAA
TTCCGCATCG AAGGGGTAGT CACGAACAAG CGGCTGCTGC AAGACCTGCT GCGCGATGCC
GACGTGCAGA CCAACGCCGT GCACACGCAG TTTCTCGATG CAAAGCTCGC CGACCTGGCC
GCAGGCAACG GTGAAGCGCA TCCCGCACTG CACGCCACGT CGGTCACCAC CCCGGACCTG
ACGCCCGCTA CGTCATTCAT CGACGAGCTT CCTGACGACG CAGAAGTGCT CACCGCGCCA
ATGGATGGCG CGCTGATCCA GATCCATGCG CAAGCCGGTG CCACGGTCGC GCGCGGCGAG
GTGCTGGCCG TCATTGAAGC GATGAAGATG GAGCACGTCG TCACCGCGCC GGCGGCCGGT
CGTGTCCTGC AAGTCTGCGC ACAGCCGGGC GCAACGGTGC GCGAGGGCCA GCCGCTGGCC
GCGCTGCAGC CCGGCGACGC GCAACACGAC GCCGCCGCAA CCGACGCAGA GATCGATCTC
GACCACATTC GCCCGGACCT GCAAGCCGTC ATCGACCGCC ATGCATTCGG TCTCGACGCG
AACCGTCCGG ATGCCGTTGC CCGCCGCCGC AAGACCGGCC AGCGCACCGC GCGCGAGAAC
ATCGCACACC TGTGCGACCC AGACTCGTTC ATCGAGTACG GTGCACTGGC CATCGCAGCG
CAACGCCAGC GGCGCGCACT CGATGACTTG ATTCGCTCGA CGCCGGCCGA CGGCATCATC
ACCGGCATTG GCACCGTCAA CGGCACGCAC TTCCCCGATC ACGACGCGCG CTGCATGGTG
CTCGCGTACG ACTACACCGT GCTGGCAGGC ACCCAGGGCA CCTTCAACCA CAAGAAGACC
GACCGTGCAC TGGAGCTGGC GCAGCAATGG AAGCTGCCCG TTGTGCTGTT TGCCGAAGGC
GGCGGCGGCC GACCGGGCGA CACTGAAAAG CGCGGCGTCA GTGGTCTGGA CTGCCCGACC
TTCATCCACT TCGCGCGTCT TTCAGGGCTG GTGCCGACCG TCGGCATCGT GTCGGGCCGC
TGCTTCGCAG GCAACGCCGC ACTGCTGGGC TGTGCCGACG TGATCATCGC CACGCGCGAC
GCGACCATCG GCATGGGCGG CCCCGCCATG ATCGAAGGCG GCGGTCTTGG CGTCTACGCG
CCTGAGGAGG TCGGGCCCGT CAACGTGCAG GCGCCGAATG GCGTGATCGA CGTGCTCGTC
GAAAACGAGA CCGAAGCCGT GGACGCCGCG CGCCGCTACC TGAGCTATTT CCAGGGGCCG
CTCGCCGACT GGGAAGCCGG CGACGTGCGC CACCTGCGCC ACGTGATTCC CGAAAACCGC
ATGCGCAGCT ATGACATGCG CGCCGTAATC GATGCATTGG CCGATACGGA TTCGGTTCTG
GAACTGCGTC AAGCCTTTGG TGTGGGCATC ATCACCGCGC TGATCCGCAT CGAGGGCCGC
GCCTTCGGCT GCATTGCCAA CAACCCGCGC CATCTGGGCG GCGCCATCGA TTCTGCAGCG
GCAGACAAGG CATCGCGCTT CATGCAGCTG TGCAACGCAT TCGACCTGCC CATCGTCTCG
CTGTGCGACA CACCGGGTTT CATGGTCGGG CCGGAGGCGG AGAAGACCGC CACGGTCCGC
CACGTCAGCC GCATGTTCGT GACAGCCGGC AACTTGCGCG TGCCTTTCTT CACCATCGTG
CTGCGCAAAG GCTACGGCCT TGGGGCGATG GCCATGGCAG CAGGCGGTTT TCACGCGCCG
CTGTTCACCG CGTCGTGGCC GAGCGGTGAG TTTGGCGGCA TGGGCATCGA AGGCGCCATC
CGCCTGGGTT ACCGCAAGGA ACTGGAAGCG GTGGAAGACC CGGCAGAACG CGAGGCCCTG
TTCCGCAAGA TGGTCGACGC CGCCTACGAG GAAGGCCGCG CGCTCAACAT CGCCAGCTAT
CTGGAGATCG ACGCGGTGAT CGACCCGGCC GATACGCGCC GCTGGCTGCT GCGCGGGTTG
CAATCGGCGC CGCCCGCCCC GCCAAGGCAC ACACGCGACC CGGCCACGCG CCGCTTCATC
GACACTTGGT AG
 
Protein sequence
MTFRKLLIAN RGEIAIRIAR AAATMGLPSV AIYSEDDRDA LHPLRADEAV PLSGTGPRAY 
LDGAAILAAA RAVGAEAVHP GYGFLSENAA FARQCAQAGV QFIGPSPRVL DLFGDKARAR
ALAHEAGIPV VSGTQGATTL EEARAFFAAL PPSHGMMIKA VSGGGGRGMR AVHDAQAIAD
AYARCVSEAT AAGGGSDVYV EALVPAPRHI EIQIVADAHG HVTHLGEREC SLQRRHQKLI
EIAPSPALDD ALRARIAEAA VTLAKAAGYS GIGTFEFLVE GAGTPHATFY FMEANPRVQV
EHTVTEMVTG IDLVVTQLAL AQGASLADVG LAQPIAPRGH AVQVRINAET LDASGQPHPS
TGMLTAFEPP NGPGVRVDTC GYAGYRPNPR FDSLLAKLIV HAPHGTYAQT LTQTYRALCE
FRIEGVVTNK RLLQDLLRDA DVQTNAVHTQ FLDAKLADLA AGNGEAHPAL HATSVTTPDL
TPATSFIDEL PDDAEVLTAP MDGALIQIHA QAGATVARGE VLAVIEAMKM EHVVTAPAAG
RVLQVCAQPG ATVREGQPLA ALQPGDAQHD AAATDAEIDL DHIRPDLQAV IDRHAFGLDA
NRPDAVARRR KTGQRTAREN IAHLCDPDSF IEYGALAIAA QRQRRALDDL IRSTPADGII
TGIGTVNGTH FPDHDARCMV LAYDYTVLAG TQGTFNHKKT DRALELAQQW KLPVVLFAEG
GGGRPGDTEK RGVSGLDCPT FIHFARLSGL VPTVGIVSGR CFAGNAALLG CADVIIATRD
ATIGMGGPAM IEGGGLGVYA PEEVGPVNVQ APNGVIDVLV ENETEAVDAA RRYLSYFQGP
LADWEAGDVR HLRHVIPENR MRSYDMRAVI DALADTDSVL ELRQAFGVGI ITALIRIEGR
AFGCIANNPR HLGGAIDSAA ADKASRFMQL CNAFDLPIVS LCDTPGFMVG PEAEKTATVR
HVSRMFVTAG NLRVPFFTIV LRKGYGLGAM AMAAGGFHAP LFTASWPSGE FGGMGIEGAI
RLGYRKELEA VEDPAEREAL FRKMVDAAYE EGRALNIASY LEIDAVIDPA DTRRWLLRGL
QSAPPAPPRH TRDPATRRFI DTW