Gene Rpic_2274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2274 
Symbol 
ID6289068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2393424 
End bp2395844 
Gene Length2421 bp 
Protein Length806 aa 
Translation table11 
GC content63% 
IMG OID642625848 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001899840 
Protein GI187929353 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.607807 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTCAT CCGCTTCCGG CTCCGGCCCC GCGTCGCCTC GTACGGGTGC GCCGAACTTG 
CCTGATCCGC GTGGCGCCGA CCTGGTAGGG GAGCGGGCAG CCCTGCCGCC CAAATCGCAT
AAGGGCGCAA GCGCCGACGC CGCTGGCTCG ACAGCCAAGC CGGAGGGCGC CGACACGCTC
TTCATTGATG CGGTGCTCGA GCAGACCTAT CGGCATCTTT TCGGCCCGAC CTCGCAGCCG
GCGGCACCGC CTCGCCAACA GGTCGTCTCC ATTTCGGGGC TGACCGAAAA GCTGTCGTAT
CTGAAGCCGG CGGATCTCAA GCTGGTGAAG GAAGCCTTCC ACTTTTCCGA TGAGGCGCAC
CTCGGGCAGT ACCGCCAAAG CGGCGAGCCG TACATCACGC ATCCCGTGGC CGTGGCAGAG
ATCTGCGCGG GCTGGAAGCT GGATGTGCAA TCGATCATGG CGGCGCTGCT GCACGACGTG
ATCGAAGACC AGGGCGTGAC CAAGAGCGAG CTTGCCGAGA AGTTCGGCCC CAAAGTCGCA
GAGCTGGTCG ACGGCCTGAC CAAGTTGGAC AAGCTTGAAT TCCAGAGCCG CGAACAGGCG
CAAGCCGAGA GCTTCCGCAA GATGCTGCTC GCGATGGCGC GCGATGTGCG CGTGATTCTC
GTCAAGCTCG CCGATCGTAC GCACAACATG CGCACGCTCG ACCACGTGCC GCCGGAGAAG
CGCCGCCGCA TTGCCGGCGA GACGATGGAG ATTTACGCGC CGATCGCGCA CCGCCTCGGC
CTGAATACGA CATACCGGGA GCTGCAGGAA CTGAGCTTCC GTATCGGCTC GCCGTTCCGG
TATGCCACGC TCGAGAAGGC GGTGAAGGCG GCGCGCGGCA ATCGGCGCGA GGTCGTGAGC
CGCATTCTGG AAACGGCCCA GCGCGCGCTG ACCGACGCGG GCATCCCGGC CGAAATGACC
GGGCGCGAAA AAACCCTGTA CAGCATTTAC CGCAAGATGC ACGACAAGCA GTTGTCGTTC
TCGCAGGTGC TGGATGTGTA TGGTTTTCGC GTGGTGGTCG ACACGCAGAT GCAGTGCTAC
ATGACGATGG GTGCGCTGCA CAGCCTGTAC AAGCCGATGC CCGGCAAGTT CAAAGACTAC
ATTGCCATCC CCAAGATCAA CGGTTATCAG TCGCTGCACA CGACGCTGGT GGGCCCGTTC
GGCACACCGG TCGAGTTCCA GATCCGGACG CGTGAGATGA ACCAGATTGC GGAAGCCGGC
GTGGCCGCAC ACTGGATGTA CAAGCAGCAC CACGACGAGC CCGATCGCGC GCAGCAGCAA
GCGCATCAGT GGCTGCAGTC GCTGCTCGAC ATCCAAAGCC AGACGGGGGA TTCGCAGGAG
TTTCTGGAGC ACGTCAAGAT CGACCTGTTC CCGGATGCGG TCTACGTGTT CACGCCCAAG
GGCGAGATCC GCGCGCTGCC GCGCGGTGCT ACGGCGCTGG ACTTCGCCTA CGCTGTGCAC
AGCGATCTGG GCAACCAGTG TGTGGCGGTC AAGATCAACA ACGAACTGCT GCCGTTGCGT
ACGGAGCTGA AAAACGGCGA CATCGTCGAG GTGGTGACGG CGCCGTATTC AAAGCCGAAC
CCCGCATGGC TCACGTTCGT GCGCACAGGC AAGGCGCGCG CGGCGATCCG GCATTTCCTC
AAGACGGCCA AGCTGGATGA GGCGATTCAA CTGGGCGAGC GTTTGCTCGA ACAGGCGCTG
CGTCAGATCG GCATCGACAT GAAGGCCGTG TCCGCCCAGG TATGGGAGCG CGTCGTGCAG
TGGACGGGCA ACAAGGCGCG TGAAGACGTT TTTGCGGATC TCGCGCTCGG CCGCCGGGTG
GCCGCCGTGG TTGCGCGCCG TCTCGAAATT CTTCTGCAAG AAGGCGGTCA CGACGGCGAT
GAAGCCTTGA TGGCGGCCGT GCATACCTTC GCTGGCGACG AGGCCCCTGC CGTCACCGTG
AGTGGCGACG AAGGCATGGC AATGGTGTTC TCTTCGTGCT GCCGCCCGAT TCCCGGTGAC
CCGATCGTCG GCTATATCGG CAAGGGCGAA GGCTTGCAGA TCCACGTGCA GGAATGCCGC
GTGGCCAAAC GTCTGCATGG CAAGGATCCC GAGCATTGGA TTGACGTCAT GTGGGCGGAG
CACACGACAC GCGCGTTCGA TGTGTCGATC AAGGTGCTGG TGCGCAATAC GAAGGGCATT
CTGGCGCGTG TCGCCGCCGA CCTGACGTCG GCTGACGCCA ACGTGGCGCA CGTGTCGATG
GAGCAAGAGG GCGATCAGGA AGCGACGTAC ATGACGTTCC TGATCCAGGT GCATGATCGC
GTGCACTTGG CCGATGTGAT GCGCGCGCTG CGGCGCAACC CGGATGTGAT TCGTATTGCG
CGAGATCGCG GTGGAGATTG A
 
Protein sequence
MPSSASGSGP ASPRTGAPNL PDPRGADLVG ERAALPPKSH KGASADAAGS TAKPEGADTL 
FIDAVLEQTY RHLFGPTSQP AAPPRQQVVS ISGLTEKLSY LKPADLKLVK EAFHFSDEAH
LGQYRQSGEP YITHPVAVAE ICAGWKLDVQ SIMAALLHDV IEDQGVTKSE LAEKFGPKVA
ELVDGLTKLD KLEFQSREQA QAESFRKMLL AMARDVRVIL VKLADRTHNM RTLDHVPPEK
RRRIAGETME IYAPIAHRLG LNTTYRELQE LSFRIGSPFR YATLEKAVKA ARGNRREVVS
RILETAQRAL TDAGIPAEMT GREKTLYSIY RKMHDKQLSF SQVLDVYGFR VVVDTQMQCY
MTMGALHSLY KPMPGKFKDY IAIPKINGYQ SLHTTLVGPF GTPVEFQIRT REMNQIAEAG
VAAHWMYKQH HDEPDRAQQQ AHQWLQSLLD IQSQTGDSQE FLEHVKIDLF PDAVYVFTPK
GEIRALPRGA TALDFAYAVH SDLGNQCVAV KINNELLPLR TELKNGDIVE VVTAPYSKPN
PAWLTFVRTG KARAAIRHFL KTAKLDEAIQ LGERLLEQAL RQIGIDMKAV SAQVWERVVQ
WTGNKAREDV FADLALGRRV AAVVARRLEI LLQEGGHDGD EALMAAVHTF AGDEAPAVTV
SGDEGMAMVF SSCCRPIPGD PIVGYIGKGE GLQIHVQECR VAKRLHGKDP EHWIDVMWAE
HTTRAFDVSI KVLVRNTKGI LARVAADLTS ADANVAHVSM EQEGDQEATY MTFLIQVHDR
VHLADVMRAL RRNPDVIRIA RDRGGD