Gene Rpic_2117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2117 
Symbol 
ID6286762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2232779 
End bp2233507 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content65% 
IMG OID642625688 
ProductMotA/TolQ/ExbB proton channel 
Protein accessionYP_001899683 
Protein GI187929196 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0811] Biopolymer transport proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.065084 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGGAAC TCGGCCTTTC CCACCTCTGG ACCCAAGGCG ATATCGTCAC CCGCGCCACG 
GCGATTCTGC TGCTCATCAT GTCGCTCGCC TCGTGGATCG TCATCTTCAC CAAGGCGTGG
GACATCGTGC GTCTGAAGTC GATGGCACAA GGCGCTGAAA AGCGTTTCTG GCACTCGGAC
GATTTCGATC ACGCCATACA GACGCTCGGC TCGCCCAAGG ACAACCCGTT CCACGCGCTC
GCGCAAACGG GCCGGGAAGC CGCGCAGCAC CACCGCGCCA GCCAGCCGCA GTTGCATGAT
GTGATGGACA TCTCCGACTG GATCACGCGC TCGCTCAAGA GCGCCATCGA TGAGGCCGTG
GGGCAAATGC AATCGGGCCT AGCCGTGCTG GCATCGGTCG GCTCGACCGC ACCGTTCGTC
GGTCTGTTCG GCACGGTGTG GGGCATCTAT CACGCCCTGC TCGGGATCGG CGCCGTCGGC
GTGCCCACCA TCGACAAAGT CGCCGGCCCC GTGGGTGAGT CGCTCATCAT GACGGCCTTC
GGTCTGGCCG TGGCCATTCC GGCGGTGCTG GGCTACAACG CGCTCACGCG CGGCAACAAG
GCCATCATCG CCAAGCTCAA CCGGTTCGCG CACGACCTGC ACGCCTATTT CGTGACGGGC
GCGCGTCTGC GCCCAGGCGC CTCGCGTGAT GACGCCGGCG TGCGCCTAAC TGCGGTCAAG
CAGCAGTAA
 
Protein sequence
MQELGLSHLW TQGDIVTRAT AILLLIMSLA SWIVIFTKAW DIVRLKSMAQ GAEKRFWHSD 
DFDHAIQTLG SPKDNPFHAL AQTGREAAQH HRASQPQLHD VMDISDWITR SLKSAIDEAV
GQMQSGLAVL ASVGSTAPFV GLFGTVWGIY HALLGIGAVG VPTIDKVAGP VGESLIMTAF
GLAVAIPAVL GYNALTRGNK AIIAKLNRFA HDLHAYFVTG ARLRPGASRD DAGVRLTAVK
QQ