Gene Rpic_2102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_2102 
Symbol 
ID6288188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2216906 
End bp2218429 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content64% 
IMG OID642625673 
Producthydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit 
Protein accessionYP_001899668 
Protein GI187929181 
COG category[C] Energy production and conversion 
COG ID[COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain 
TIGRFAM ID[TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.228521 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.564936 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGTCA TTCGTCAAGA AGACCTCATC CAGAGCGTCG CCGACGCGCT GCAGTACATC 
AGCTACTACC ACCCGATGGA CTACATCACT GCTCTGGGCC GCGCCTATGA GCAGGAGCAG
AGCCCGGCGG CCAAGGATGC CATCGCGCAG ATCCTGACCA ACAGCCGCAT GTGCGCCGAA
GGCAAGCGCC CGATCTGTCA GGACACCGGC ATCGTCACCG TGTTCCTGAA GGTCGGCATG
AACGTGCGCT GGGACGGCGC CACGATGAGC CTGGAAGACA TGGTCAACGA AGGCGTGCGC
CGCGCGTACA ACGACGTCGA CAACAAGCTG CGTGCAAGCG TGCTGGCTGA TCCCGCTGGC
AAACGCACCA ACACGAAGGA CAACACCCCG GCCGTGATCA ACATGTCGAT CGTGCCGGGC
GACACAGTGG ACGTGATCGT CGCGGCCAAG GGCGGCGGCT CCGAAGCCAA GTCGAAGTTC
GTGATGCTGA ATCCGTCGGA TTCGATCGTC GACTGGGTGC TCAAGACCGT GCCGACCATG
GGCGCCGGCT GGTGCCCGCC GGGCATGCTG GGCATCGGCA TTGGCGGCAC GGCTGAAAAG
GCCATGCTGC TGGCCAAGGA AGCCCTGATG GAGCCGATCG ACATTCAAGA CCTGATCGCC
CGCGGCCCCA GCAACCGCGC AGAAGAACTG CGCATCGAGC TGTATGAGAA GGTCAACGCG
CTGGGCATTG GCGCGCAAGG CCTGGGCGGC CTGGCCACCG TGCTCGACGT GAAGATCCTG
GACTACCCGA CGCACGCAGC CAACCTGCCG GTTGCCATGA TCCCGAACTG CGCCGCCACG
CGCCACGCGC ACTTCACCCT GGACGGCAGC GGCGTTGCCA AACTGGAAGC GCCGGACCTG
TCGCAATGGC CGAAGGTCGA GTGGGCACCG AACACGGAAA CGTCGAAGCG CGTCGACCTG
AATACGCTCA CGCCGGAAGA AGTTGCCTCG TGGAAGCCCG GCCAGACGCT GCTGCTGAAC
GGCAAGATGC TGACGGGTCG CGACGCCGCA CACAAGCGCA TCGCCGACAT GCTCGCCAAG
GGCGAAAAGC TGCCGATCGA CTTCACCAAC CGCGTGATCT ATTACGTCGG CCCGGTCGAC
CCGGTGCGCG ATGAGGTTGT CGGCCCGGCA GGCCCGACCA CGGCCACGCG CATGGACAAG
TTCACCGAGA CGATGCTCGC CCAGACGGGT CTGATCGCCA TGGTGGGCAA GGCCGAGCGC
GGCCCGGTCG CCATCGAGTC CATCAAGAAG CACAAGTCGG CTTACTTGAT GGCCGTGGGC
GGCGCGGCGT ACCTGGTGTC GAAGGCCATC CGCGGCTCGA AGGTGCTGGC GTTCGAAGAC
CTTGGCATGG AAGCCATCTA TGAGTTTGAC GTGAAGGACA TGCCTGTCAC CGTGGCCGTG
GACAGCTCGG GCACGTCGGT CCACAAGACC GGCCCGGCGG AATGGCAAGC GAAGATCGGC
AAGATTCCGG TCGCAGCGGG CTGA
 
Protein sequence
MTVIRQEDLI QSVADALQYI SYYHPMDYIT ALGRAYEQEQ SPAAKDAIAQ ILTNSRMCAE 
GKRPICQDTG IVTVFLKVGM NVRWDGATMS LEDMVNEGVR RAYNDVDNKL RASVLADPAG
KRTNTKDNTP AVINMSIVPG DTVDVIVAAK GGGSEAKSKF VMLNPSDSIV DWVLKTVPTM
GAGWCPPGML GIGIGGTAEK AMLLAKEALM EPIDIQDLIA RGPSNRAEEL RIELYEKVNA
LGIGAQGLGG LATVLDVKIL DYPTHAANLP VAMIPNCAAT RHAHFTLDGS GVAKLEAPDL
SQWPKVEWAP NTETSKRVDL NTLTPEEVAS WKPGQTLLLN GKMLTGRDAA HKRIADMLAK
GEKLPIDFTN RVIYYVGPVD PVRDEVVGPA GPTTATRMDK FTETMLAQTG LIAMVGKAER
GPVAIESIKK HKSAYLMAVG GAAYLVSKAI RGSKVLAFED LGMEAIYEFD VKDMPVTVAV
DSSGTSVHKT GPAEWQAKIG KIPVAAG