Gene Rpic_1978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1978 
Symbol 
ID6288558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp2087482 
End bp2089707 
Gene Length2226 bp 
Protein Length741 aa 
Translation table11 
GC content64% 
IMG OID642625546 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001899545 
Protein GI187929058 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.699321 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAACA AGACCGAACG GCCGGCCGAG TTGCCCGGAT CGACGGCAGA GCAGGTCGCT 
CGGGCGATCG AATACCTCGC GGCCAATGCC GCAGACAGCG TCACGCTGAC CGGCGAGCCG
CTGGAGTCGC ATGCGCGCGG CACGATCGCC ATCCTTGAAG GGTTGCGTGT CGACACGCCG
TCGTTGCAGG CGGCCGCGCT GTTTCTGTTG CCCACGCTGG CAATGGACAG CGAAAAGGCG
CTCGAGCCTG CATTCGGTGC CGAGGTCGTC AAGCTCGTGC ACGACGTGCG GCAACTGCTG
CGCATTGGCG CGATTGCGGG CCTCGTCAGC CCGACCGATG CCAGCATTAC GCGCAAGAAC
GAAGCCGAAG CACGCCGCGC GCAAGTCGAG GCGTTGCGCA AGATGTTGCT CGCGTTCGCG
CAAGACATTC GCGTGGTGAT GATCCGCCTG GCGTCGCGGT TGCAGTCGCT TCGCTGGCTG
GCCCAGACGA AGCGGTCGGC GCCGGAAGGC ATGGCGCGCG AGACGCTGGA TATCTACGCG
CCGCTCGCAA ACCGCCTGGG CATCTGGCAG CTGAAGTGGG AGCTTGAAGA CCTCGGCTTC
CGCTTTGAGG ATCCCGATAC CTATAAGCGC ATCGCGCGCC TGCTGGACGA AAAGCGCATC
GAGCGCGAGA AGTTCATCGG CCAGGCCATC GAGCAACTCC AAAAGACATT GCACGATGCC
GGCATTCAGG CTGAGGTCAG CGGTCGGCCC AAGCACATCT ACAGCATCTG GAAGAAGATG
CGAGGCAAGG AACTGGACTT TGCCGATCTG TACGACGTGC GCGCCTTCCG TGTCATCGTC
GACGACATCA AGGATTGCTA CACGGTGCTC GGTTTCGTGC ACCACATGTG GCAGCCGATC
CCGAAAGAGT TCGACGACTA CATCTCACGC CCAAAGGCCA ACGGCTACAT GTCGCTGCAC
ACGGTGGTGA TCGGCGACGA CGGCCGTGCG CTCGAGGTGC AGATTCGCAC GCGCGAGATG
CACCACTTTG CCGAGTACGG CGTGGCTGCG CACTGGCGCT ACAAGGAGGC GGGCAACAAG
GGCTACGCCG GCCAGTTCTC TGCCAGCGAG CGCTACGACG AGAAGATCGC GTGGCTGCGC
CAGTTGCTCG CCTGGAAAGA TGACGCCGAG CACACCGTCG CGCACGAGGA TTCGCCGTGG
GAGCAGCTCA AGCACACCGA GCTGGATGAC CACATTTACG TGCTGACGCC GCAGGCGCGC
GTGATCGCGT TGCCGCAAGG TGCGACGCCC GTCGATTTTG CGTATTACCT GCATAGCGAT
CTCGGCCACC GCTGCCGCGG CGCGCGCGTC GACGGCACGA TGGTGCCGCT GAACACGCCG
CTCAAGAACG GCCAGACCGT CGAGATTGTT ACCGTCAAGC ACGGCGGGCC GTCACGTGAT
TGGCTGAACA CCGAGCTGCA CTATCTTGTC AGCCCGCGCG CCCGCACGAA AGTGCGCGCG
TGGTTCAACG CGATGGAACT GGAAGAGACG CTCGCGCAGG GCCGGGCGCT TATCGACAAG
ACGCTGCAGC GTGAGGGCAA GACCGCCGTC AACCTGGAAG AACTGGCCGC CAAGCTCGGC
TACAAGACGT CGGACGATCT CTATGCCGTG GTCGCCAAGG ACGAACTGAG CCTGCGCCGC
ATCGAGGCCG TTTTGCGCTC GGATGGGGCG CCGCCGCCCG CGCCCGTCGA CGACGAAGCG
GCCATCACCA AGAAGAGCCG CGCCACCAGC GTGGCTCGTG GCGCCAAGAG CGGCGTGCTC
GTGGTGGGCG TCGATTCGCT CCTCACGCAG ATGTCGCGTT GCTGCAAGCC GGCACCGCCG
GACCCCATCG TTGGTTTTGT CACGCGTGGG CGCGGCGTAT CGATCCACCG TCAGAGCTGC
GCGACCTTTC AGCAACTGGC TGCCCGGGCG CCCGGCCGTG TAATCCAGAC GGAATGGGGC
CAGCGCAGCG ATTCGGTCTA TCCGATCGAC ATCCAGGTCG AGGCGCTGGA CCGGCAGGGA
TTGTTGCGTG ACATCTCGGA AATCCTCTCG CGCGAGAAGA TCAACGTGAC CGGCGTGCGC
ACGCTGTCGA GCAAAGGCGT CGCAAAAATG CAGTTCACCG CGGAGGTGGC AGAGGCGACA
CAGCTGCAGC GCGCGCTGAC TTTGATCGAA GAGGTGCAGG GGGTGTTGAC AGCTCGAAGG
AAGTGA
 
Protein sequence
MENKTERPAE LPGSTAEQVA RAIEYLAANA ADSVTLTGEP LESHARGTIA ILEGLRVDTP 
SLQAAALFLL PTLAMDSEKA LEPAFGAEVV KLVHDVRQLL RIGAIAGLVS PTDASITRKN
EAEARRAQVE ALRKMLLAFA QDIRVVMIRL ASRLQSLRWL AQTKRSAPEG MARETLDIYA
PLANRLGIWQ LKWELEDLGF RFEDPDTYKR IARLLDEKRI EREKFIGQAI EQLQKTLHDA
GIQAEVSGRP KHIYSIWKKM RGKELDFADL YDVRAFRVIV DDIKDCYTVL GFVHHMWQPI
PKEFDDYISR PKANGYMSLH TVVIGDDGRA LEVQIRTREM HHFAEYGVAA HWRYKEAGNK
GYAGQFSASE RYDEKIAWLR QLLAWKDDAE HTVAHEDSPW EQLKHTELDD HIYVLTPQAR
VIALPQGATP VDFAYYLHSD LGHRCRGARV DGTMVPLNTP LKNGQTVEIV TVKHGGPSRD
WLNTELHYLV SPRARTKVRA WFNAMELEET LAQGRALIDK TLQREGKTAV NLEELAAKLG
YKTSDDLYAV VAKDELSLRR IEAVLRSDGA PPPAPVDDEA AITKKSRATS VARGAKSGVL
VVGVDSLLTQ MSRCCKPAPP DPIVGFVTRG RGVSIHRQSC ATFQQLAARA PGRVIQTEWG
QRSDSVYPID IQVEALDRQG LLRDISEILS REKINVTGVR TLSSKGVAKM QFTAEVAEAT
QLQRALTLIE EVQGVLTARR K