Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1919 |
Symbol | |
ID | 6289866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 2024277 |
End bp | 2025389 |
Gene Length | 1113 bp |
Protein Length | 370 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642625483 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_001899486 |
Protein GI | 187928999 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.338974 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0110313 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATC GCATCAAGCA TTATAGCCCA AGCCCTGTGT CAGACGACGC ACTGGCTGAC GTTTCCCTCA CTGCGCCGGA GACGGAAGAC GCCCTCGATG ATGAGGCGCT CGATTTGCCT GCCGCCGGTG CGGGCCAGGC AGCCGAGCCG ATCATCATAG AGATTCCGGA AACCATGCAC GGCGAACGCC TGGACAAGGC GCTTGCCAAG CTGCTGCCCG ACTATTCGCG CAGCCGCCTC CAGCAATGGA TTGATGCCGG CGCGGTGCGC CTGCGTGGTG AGGTGGTGCG CCCGCGTGCG GCGATCTCCG GCGGTGACCG CATCGAAGTC GTCCCGCAAC GCGCGGCCGA CGAAAACGCC TTCGTCGCCG AGCCCATCGA CCTGGATGTG GTGTACGAAG ACGACACGCT GCTCGTCATC AACAAGCCTG CCGGGCTGGT GGTGCATCCC GCCGCGGGCA ACTGGAGCGG CACCGTACTC AACGGCCTGC TGCACCGCTA TCCCGACGCC GTAGAGTTGC CGCGTGCCGG CATCGTTCAC CGCCTCGATA AAGACACTTC CGGCCTGATG GTGGTCGCCC GTACGCTGCC TGCGCAGACC GACCTCGTGC GCCAATTGCA GGCACGTACC GTCAAGCGGA CTTATCTCGC GCTGGTGTGG GGCGAAACGC CGGAAGAAGC CACGATCGAT GCTCCGATCG GCCGCGATCC GCGTGACCGC ACGCGCATGG CCATCATCGA GACAGCCAGC GGCAAGCCGG CGCGCACGCA TTTCAAGACG CTTGACGTGG TGGACCTCGG GCGCGCACAG GTGTCGCTGG TGCGTTGCCA GCTCGAGACC GGCCGTACAC ACCAGATTCG TGTGCACTTT GAATCGGAGG GGCATCCGTT GCTTGGCGAT CCGGTCTACA CGCGCAACTT CCGACGTGGC CAGCCGCAGA CGATCAAGGC GCAGTTGCCG GTGCCTTTTA CGCGGCAGGC GCTGCATGCA GTGCGCCTGG GGCTCGTGCA CCCAGCATCG GGCAAATCGG TGCACTGGGA AGCCGGCGTG CCCGACGATT TTGCCGATCT GCTGGAAGCT CTCGACCTGG ACCCCGATGC CGATGTCAAC TGA
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Protein sequence | MKNRIKHYSP SPVSDDALAD VSLTAPETED ALDDEALDLP AAGAGQAAEP IIIEIPETMH GERLDKALAK LLPDYSRSRL QQWIDAGAVR LRGEVVRPRA AISGGDRIEV VPQRAADENA FVAEPIDLDV VYEDDTLLVI NKPAGLVVHP AAGNWSGTVL NGLLHRYPDA VELPRAGIVH RLDKDTSGLM VVARTLPAQT DLVRQLQART VKRTYLALVW GETPEEATID APIGRDPRDR TRMAIIETAS GKPARTHFKT LDVVDLGRAQ VSLVRCQLET GRTHQIRVHF ESEGHPLLGD PVYTRNFRRG QPQTIKAQLP VPFTRQALHA VRLGLVHPAS GKSVHWEAGV PDDFADLLEA LDLDPDADVN
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