| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1904 |
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| Symbol | |
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| ID | 6287268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 2005460 |
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| End bp | 2008891 |
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| Gene Length | 3432 bp |
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| Protein Length | 1143 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642625468 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001899471 |
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| Protein GI | 187928984 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.288854 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGATT TTTCGCTCTC TGCCCTGCCC GCCGTCAAAC CGGGCGCGCG CTTCGTCTTC
AGTGGCCTGC AGGGCGCGGC AGATGCCCTG CTGCTGGCAC GCTACCTGGA GCAGCATCGC
GCCGCGGCGC CGATGCTGGC GGTGGTCTGC GCCAATGCCG TCGATGCCCA GCGCCTGGCG
GAGGAGCTAC GCTGGTTTGC CCCGCAGGCG CGCGTGAAGC TGCTGCCGGA CTGGGAAACG
CTGCCGTACG ACAATTTCTC GCCGCACCAG GATTTGATCT CCGAGCGGCT GGCGACGCTG
CATGACCTGC AGAACGGTGC GTGCGACATC CTGCTCGTGC CTGCCTCCAC GGCGCTGCAG
CGCGTGGCGC CGCCATCATT CCTCGCCGCT TACACGTTCT TCTTCAAAAA GGGCGAAAAG
CTGGACGAGG CGGCGCTGAA AGCGCAATTC ACGCTGGCCG GCTACGAGCA CGTCAGCGCC
GTGATGCGGC CAGGCGAATA CTCCGTGCGG GGCGGCCTGA TCGACTTGTT CCCGATGGGC
TCTCCGCTGC CGTATCGGCT GGACCTGTTT GGCGACGAAA TCGAGACGAT CCGCTCGTTC
GACCCAGACA CGCAGCGCAG CCTCTACCCG GTGAACGAAG TCCGCCTGCT GCCGGGCCGC
GAATTTCCGA TGGACGAGGC CTCGCGCACT GCCTTCCGCG GACGCTGGCG CGAGGTGTTC
GAGGGGGACC CGACGCGCTC GCCCATCTAT AAGGACATCG GCAACGGCGT GCCGAGCGCC
GGCATCGAGT ACTACCTGCC ACTGTTCTTC GACGAGACCG CGACGCTGTT CGACTACCTG
CCGGGCACCA CGCATCTTGC CTTCGTGGGC GACATCGAAG GCGCGGTGCG CCGCTTCTGG
GCCGACACCA CGCAGCGCTA CAACTTCATG CGCCACGACC GCGAGCGCCC GCTGCTGCAG
CCGTCTGCGC TGTATCTGGA TGAAGAGGCG TTCTTCGTCG CCGCCAAGCC GCACGCACGT
CTGGTGTTGC GCGCCGAGCC CGGCGATGCA CCGCTTTCGC TGCCGTTGCC GAACGTTGCC
GTCAACCGCC GCGCGGAAGA CCCGCTGGTC AATCTCGAAT CGTTCCTGAT GCGCAGCAAC
TGCCGCGTGA TGATCTGCGC CGAATCCGCA GGCCGCCGCG AAACGCTTGC GCAAATGCTT
GCCGCCAGCG GCCTGCACCC CGAAGGCGTC GCGGACTTTG CGGACCTGAT GAGCGGCGAT
GCCAAGTTCG TGCTGGGCGT GGCACCGCTG TACCAGGGCT TCATCCTCGG CGACGAACGC
ATCGCGCTCA TCACCGAGAC CGAGCTGTAC GCGCAGACCG TGCGCCGCGC AGGTCGCCGC
AAGCAGGAAC AGGCCACCGC CGTCGATTCA ATGGTGCGCG ATCTGGCCGA GTTGAAGATC
GGCGACCCGG TGGTGCACAG CGAGCACGGC ATCGGGCGCT ACCAGGGGCT GGTGTCCATC
GACATGGGTA ACGGCGAGGA AGAATTCCTG CACCTCGACT ACGACAAGGG CAGCAAGCTC
TACGTGCCGG TGCATCAGTT GCACGTGATC TCGCGCTACT CGGGCGCCGA TCCGGAAACC
GCGCCGCTGC ATTCGCTCGG CTCCGGCCAA TGGGAAAAGG CCAAGCGCAA GGCGGCGCAG
CAGATTCGCG ATACGGCGGC TGAACTGCTG AACCTGTACG CGCGGCGCGC ATTGCGCCAG
GGCTTTGCAT TCCCGCTCAC GCCCGAGGAC TACGCGACGT TCGCCGAGAG CTTCGGCTTT
GAGGAAACTC CCGATCAGGC CGCCGCCATC GCGGCAGTGA TCGCCGACAT GACGTCGGGC
AAGCCGATGG ACCGGCTCGT CTGCGGCGAC GTCGGCTTCG GCAAGACGGA AGTCGCGCTG
CGTGCCGCGT TTGTGGCGGT CATGGGTGGC AAGCAGGTGG CCATCCTGGC CCCGACCACG
CTGCTTGCCG AACAGCATTA CCAGACGCTG GTCGACCGCT TTGCCGACTG GCCGGTGCGC
ATTGCCGAGA TCTCGCGTTT CAAGAACAAG AAAGAAATCG ACGCCGCGAT CGAAGCCATC
AACGCCGGGA CCATCGACAT CGTGATCGGC ACGCACAAGC TGCTCTCGCC GGACGTGAAG
TTTGACCGCC TGGGGCTCGT CATCATCGAC GAGGAACATC GCTTTGGCGT GCGCCAGAAG
GAAACGCTCA AAACGCTGCG CGCCGAGGTG GACGTTCTTA CGCTCACCGC CACGCCGATC
CCCCGCACGC TGGGCATGGC GCTGGAAGGC CTGCGCGATT TCTCCGTGAT CGCCACCGCG
CCGCAAAAGC GGCTGGCCAT CAAGACGTTC CTGCGCCGCG AGGAAGATGG CGTGCTGCGC
GAGGCCATCC TGCGCGAGCT GAAACGTGGC GGCCAGGTCT ATTTCCTGCA CAACGAGGTC
GAGACCATCG AGAACAAGCG CGCCAAGCTC GAAGAGCTGA TTCCGGAAGC GCGCGTGGTC
GTCGCCCATG GCCAGATGCA CGAACGCGAA CTGGAACGCG TGATGCGTGA TTTCGTGGCC
CAGCGCGCCA ACATCCTGCT GTGTACGACG ATCATCGAAA CCGGCATCGA CGTGCCGACC
GCAAACACGA TCCTCATCCA CCGTGCCGAC AAGTTCGGCC TGGCGCAACT GCATCAATTG
CGCGGTCGCG TCGGGCGCTC GCACCACCAG GCATATGCGT ATCTGCTGGT GCATGACGTA
GACGGCCTGA CCAAGCAGGC ACAGCGCCGG CTTGAAGCCA TTCAGCAAAT GGAAGAACTC
GGTGCGGGCT TCTATCTCGC AATGCACGAT CTCGAAATCC GCGGCGCCGG CGAGGTACTG
GGCGACAAGC AATCGGGCGA GATTTCCGAG ATCGGCTTCC AGCTCTACAC CGACATGCTC
AACCAGGCAG TGAAGTCACT GAAGGCCGGC AAGGAACCCG ATCTGATGGC GCCGCTTGCG
GCCACGACCG AGATCAACCT CGGCACGCCG GCCTTGCTGC CGCAGGACTA TTGCGGCGAT
GTGCAGGAGC GCCTGTCGCT GTACAAACGC CTGGCCAACT GCGAAAGCAG CGAGACGATC
GACAATATCC AGGAGGAGCT GATCGACCGT TTCGGCAAGC TGCCGCCGCA GGCGCAATCG
CTCATCGAAA CGCACCGACT GCGCATTGCC GCCGCGCCGC TGGGCATCCG CAAGATCGAC
ACCGGCGCGA ACGCCGTCAC GCTGCAGTTC ATCCCGAACC CGCCCGTTGA CGCCATCAAG
ATCATCGATC TCGTGCAGAA GAACCGGCAG ATCAAGCTGG CGGGGCAAGA TCGGCTGCGT
ATCGAGAACA TTCCGGTCGA ATTCGCCGCG CTGGCGCAGA CCATTCGCCA CGCCATGCGG
CAATTGACGT GA
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| Protein sequence | MSDFSLSALP AVKPGARFVF SGLQGAADAL LLARYLEQHR AAAPMLAVVC ANAVDAQRLA
EELRWFAPQA RVKLLPDWET LPYDNFSPHQ DLISERLATL HDLQNGACDI LLVPASTALQ
RVAPPSFLAA YTFFFKKGEK LDEAALKAQF TLAGYEHVSA VMRPGEYSVR GGLIDLFPMG
SPLPYRLDLF GDEIETIRSF DPDTQRSLYP VNEVRLLPGR EFPMDEASRT AFRGRWREVF
EGDPTRSPIY KDIGNGVPSA GIEYYLPLFF DETATLFDYL PGTTHLAFVG DIEGAVRRFW
ADTTQRYNFM RHDRERPLLQ PSALYLDEEA FFVAAKPHAR LVLRAEPGDA PLSLPLPNVA
VNRRAEDPLV NLESFLMRSN CRVMICAESA GRRETLAQML AASGLHPEGV ADFADLMSGD
AKFVLGVAPL YQGFILGDER IALITETELY AQTVRRAGRR KQEQATAVDS MVRDLAELKI
GDPVVHSEHG IGRYQGLVSI DMGNGEEEFL HLDYDKGSKL YVPVHQLHVI SRYSGADPET
APLHSLGSGQ WEKAKRKAAQ QIRDTAAELL NLYARRALRQ GFAFPLTPED YATFAESFGF
EETPDQAAAI AAVIADMTSG KPMDRLVCGD VGFGKTEVAL RAAFVAVMGG KQVAILAPTT
LLAEQHYQTL VDRFADWPVR IAEISRFKNK KEIDAAIEAI NAGTIDIVIG THKLLSPDVK
FDRLGLVIID EEHRFGVRQK ETLKTLRAEV DVLTLTATPI PRTLGMALEG LRDFSVIATA
PQKRLAIKTF LRREEDGVLR EAILRELKRG GQVYFLHNEV ETIENKRAKL EELIPEARVV
VAHGQMHERE LERVMRDFVA QRANILLCTT IIETGIDVPT ANTILIHRAD KFGLAQLHQL
RGRVGRSHHQ AYAYLLVHDV DGLTKQAQRR LEAIQQMEEL GAGFYLAMHD LEIRGAGEVL
GDKQSGEISE IGFQLYTDML NQAVKSLKAG KEPDLMAPLA ATTEINLGTP ALLPQDYCGD
VQERLSLYKR LANCESSETI DNIQEELIDR FGKLPPQAQS LIETHRLRIA AAPLGIRKID
TGANAVTLQF IPNPPVDAIK IIDLVQKNRQ IKLAGQDRLR IENIPVEFAA LAQTIRHAMR
QLT
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