| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1894 |
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| Symbol | |
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| ID | 6289661 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1996016 |
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| End bp | 1996849 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642625458 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001899461 |
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| Protein GI | 187928974 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.635436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.151415 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCCCG ACAATTACTG CGCCGACAAA GCGGCACCGC CCGGCAGCGA CGTGTACTAC
AGCGTATTGT TTCTGGCGCC CGAACGCCGC CGCGCGACCA TCGCGCTGGA AGCCGTGCGC
CGTGAGCTGG AAGACGCCGT ACGCGACGCG AGCGATCCGG CGGTCGTGCA ATCGAAGCTG
CAGTGGTGGC GGCAGGAGCT TGCGCGGCTG TTCGAGGGCC GCCCTGAGCA CCCCGCGGCG
AAGGCATTGC AGCCGCATCT GGCCCGCTAC GATATAGGCG CCGTGCATCT GGGCGAATTA
TTGGCCGGCG TAGAGGCTGA CGCCATGCAA AACCGCTATC TGGATTGGCC CAACCTGCGC
CGCCACGGCG ATCAGGTGGC GGGCGTGGCA GGCCGGCTGA CGGCTCGCAT TGCCGGACAG
ACGCATGCGC GCACGCTGGA ATTCGCGCGG CTGATGGCAC TCGCCGAGCA GCTCGTTCAT
TTCGTCAGGA ACCTGGGCGA AGACGTGCGC CATAACCGCG TCTACATCCC CGTGGACGAG
CTGCAGCGGT TCAACGTACC CGCCGCCGAT CTGTTCAATC GCCGGTATGC AGAGGGCTTT
AAGCCGTTGA TGGCATTTCA GGCCGAGCGT GCCCGCGCGA CCTACAAGGA AGCACTTGCC
GCGCTGCCGG CAGAAGATCG CCGCGCGCAG CGTTCAGCGC TGATTCGCGG CGTGCTGGCC
ATGCGCCTGA TCGACGAGGT GGAAGCCGAC GGCTTCCAGG TGCTCACGCA GCGTACGGAC
CTGACGCCGC TGCGCAAGCT CTGGCTGGCC TGGAAGACGC AGATCCGCGG TTGA
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| Protein sequence | MTPDNYCADK AAPPGSDVYY SVLFLAPERR RATIALEAVR RELEDAVRDA SDPAVVQSKL
QWWRQELARL FEGRPEHPAA KALQPHLARY DIGAVHLGEL LAGVEADAMQ NRYLDWPNLR
RHGDQVAGVA GRLTARIAGQ THARTLEFAR LMALAEQLVH FVRNLGEDVR HNRVYIPVDE
LQRFNVPAAD LFNRRYAEGF KPLMAFQAER ARATYKEALA ALPAEDRRAQ RSALIRGVLA
MRLIDEVEAD GFQVLTQRTD LTPLRKLWLA WKTQIRG
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