| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1871 |
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| Symbol | mnmC |
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| ID | 6288466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 1971912 |
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| End bp | 1973930 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642625435 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001899439 |
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| Protein GI | 187928952 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0302238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACGCG GCCTCGTTCT CGCCACGCCT CAGCTCACGT CGGACGGCAC GCCGTTCTCC
GCGCAATACG ACGACGTCTA TCACAGCTCC GAAGGCGGTC TGGCCCAGGC GATTCACGTT
TTCCTGGGCG GTAACCGCTT GCCGGGCGCG TGGCAAGGCA AACGCACCTT CACCATTGTC
GAAACCGGCT TCGGCCAGGG CTTGAATTTC CTGGCCACCT GGGCTGCATG GCGCGACGAT
CCACAGCGTT GTGCACGGCT CGATTTCGTC TCGATCGAGA AGCATCCGTT CGATCGCGCA
GGCTTGTCGA TCGTGCATCC GACAATCGGT GCGCTGGCTC CGCTGGCCGA GACGCTCCGT
CAATCATGGC CGGTGCCGGT GCCCGGCGTG CATCGACTGG CGTTCGACGG CGGCCGCGTT
ACGCTGATGC TGTTTTTCGG TGATGCGATG GAGATGCTGC CGCAACTGTC GTGCGCTGCC
GACGCGTTCT ATCTCGACGG TTTTTCTCCC GCCAAGAACC CCGATCTGTG GCAGCCGCGC
GTGTTCAGGC AGCTCGCGCG GGTCGCTCGC GCCGGCGCGA CATTGGCCAC GTACACCGCC
GCAGGATTCG TGCGGCGCGG CTTGCAGGAG GCCGGCTTCG AGGCGCACAA GGCGCACGGT
TTCGGAACCA AGCGCGACAT GACCGTCGCG CAATTTCCGA CCCATTGGCG CACACGGCGT
GGGCCGGCTG AAGCGCCTGT CTGGAGCCAG CGTCACGCCA TCGTGCTTGG CGCCGGGCTC
GCGGGCTGCT CGGTTGCGGA ACGGCTCGCG TCGCGCGGCT GGCGCATCAC GCTCATCGAC
GCAAACGATG GCCCCGCACA CGGCACGTCG GCGCACCGTG CTGCGGCCAT GCATCCGCAT
GTATCCATCG ACGACAGCGT GCTCTCGCGC CTATCGCGCG CCGGCAACCT GCTTGCACGC
CGCCATTGGG ATGCACTCGA TCGCGCCGGC TTCGCCACAG GTTTCCAGCC CACCGGCGTG
CTCCAACTCG CCGAACACGT GGGCGACGCC ACTGAACAGC AACGCATCGT GCGGGCGCTC
GGCTACCCGG TCGACTACAT CGATTGGCTC AATGTGGACG CCGCCGCCAA GCGCGTCGGT
GCCAGCGTGC CGCAGGGCGG CTGGTGGTTT GCGCAAGCGG GCTGGGTTGC GCCGCCTGAT
GTTTGCCGTG CCAATCTGGC CGCTGCAGGC GCTGCAATCG ACACACGTTG GGGTACGCAC
GTCGAATCGC TGCGCCAAGA CGGCGATCAA TGGCAGGTCC TCGATGCGCA GGGCGATGTG
ATCGCGAGCG CGCCGGTCGT CATCCTCGCC AACGGTCTTG GCGCTACGCG CCTGGCTGCG
CTGACATCCG CGTCGCTCAA GCCCGTTCGC GGTCAACTCA CCGACGTGCC CATCACCAGT
TTGGAAGCGG GCGCCGCGTG GCCGAAGGCC GTCGTCTGCG GCGATGGCTA CTTGCTGCCC
ACCGAGCCGG GCGCGAAAAC GGTGCGCACG GGCTCGTCGT TCCAGCCCGG TGAAGCCGAT
CTGACCGAGC GCGTGGCCGA TCACGCGGGC AATCTCCGGC GACTGTCTGG GTTGCAGCCT
CAGCAATTGG GTGCACTGGC GAAGCTGGAC CCTGCGCAAC TGCAGGGCTA CGTCGGTGTG
CGGTGCGTGT CAGCCAATCG GCTGCCGTTG ATCGGCCCGC TGGTGGATGA GGCGGCGGCC
TTGGCGCCGG GCTTTCGTTT GCGCGGTCCG CATGCGCAGC TGCCTCGCCT CGCCGGGCTG
TATGCCGCAC TTGCGTATGG CTCGCGGGGC CTCACCTGGT CGGTACTGGG TGCGGAGTTG
CTGGCGGCCC AGATCGACGG TGGTCCGCTG CCGCTTGAAT CGGACCTGGC TGCAGCGCTT
GATCCCGGCC GCTTCATCCT GCGCGCATTG CAGCTTCGAC GCACGCAGGA GCAGGGCGCC
GCACCCGCGG AAAGCGAAGC TGCGGAACCT CTGGATTAA
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| Protein sequence | MPRGLVLATP QLTSDGTPFS AQYDDVYHSS EGGLAQAIHV FLGGNRLPGA WQGKRTFTIV
ETGFGQGLNF LATWAAWRDD PQRCARLDFV SIEKHPFDRA GLSIVHPTIG ALAPLAETLR
QSWPVPVPGV HRLAFDGGRV TLMLFFGDAM EMLPQLSCAA DAFYLDGFSP AKNPDLWQPR
VFRQLARVAR AGATLATYTA AGFVRRGLQE AGFEAHKAHG FGTKRDMTVA QFPTHWRTRR
GPAEAPVWSQ RHAIVLGAGL AGCSVAERLA SRGWRITLID ANDGPAHGTS AHRAAAMHPH
VSIDDSVLSR LSRAGNLLAR RHWDALDRAG FATGFQPTGV LQLAEHVGDA TEQQRIVRAL
GYPVDYIDWL NVDAAAKRVG ASVPQGGWWF AQAGWVAPPD VCRANLAAAG AAIDTRWGTH
VESLRQDGDQ WQVLDAQGDV IASAPVVILA NGLGATRLAA LTSASLKPVR GQLTDVPITS
LEAGAAWPKA VVCGDGYLLP TEPGAKTVRT GSSFQPGEAD LTERVADHAG NLRRLSGLQP
QQLGALAKLD PAQLQGYVGV RCVSANRLPL IGPLVDEAAA LAPGFRLRGP HAQLPRLAGL
YAALAYGSRG LTWSVLGAEL LAAQIDGGPL PLESDLAAAL DPGRFILRAL QLRRTQEQGA
APAESEAAEP LD
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