| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1857 |
|---|
| Symbol | |
|---|
| ID | 6286292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 1948063 |
|---|
| End bp | 1952031 |
|---|
| Gene Length | 3969 bp |
|---|
| Protein Length | 1322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642625419 |
|---|
| Product | outer membrane autotransporter barrel domain protein |
|---|
| Protein accession | YP_001899425 |
|---|
| Protein GI | 187928938 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000000638249 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGGG TCTATCGGCT GGTCTGGAGC CGCACCTTGC GTGCTCCGCA AGTGGTATCG
GAACTGACAA AGGCATCGCG CGGGGGCGTT GACGCCAGCG GCGACACGAC ACATGCGCGT
CGGCGCGCAT CCATCATTTC GATTGGCGTA TCACTCGGTC TGGCCGGCGC GGCACTCCCG
AGCTGGGCCG CGACCTGCTC GTCGAGCACG ATCGCAGCCT GCAGCGCTGC TGGCGGCAAT
GGCATCCCGA ACCGCAGCGG TAATGGCGGC AGCGGCAATG GCGGGGGCGG TGGTTCGTCG
ACGCTGGGCG GAGGCTCGGC CACCGTTCAG GTCCCGGGCG GGCCGACTTC CGGCGGGACG
GGCGGCACCG GTGCCACGAA CGACAGCGGG CAGGGCGGCC CGGGCGGCGC TCCCGCAGTC
GTGCTCGCTG GCGATGCCGT GGTCAATGCA AACGCGCAGG GCGGATCTGG CCAAGCGTTC
GACGGATTCA CTTTTGCAGG CGGCGCGGGC GGCGGCGGTG CGGGCGTGTA TTCCACGGGC
ACCAGCGTCA CAGTCAACGG CGGGATGACC GTGCAGGGGG GCGCGGGCGG AAATGGCGGT
GCCGGCACAT CGGGGCCGGC CTCCAACGGC GGTGGCGGCG GCGGTGGCGG TGCAGCGTTC
GTCATAGTGA CGCCAGCGGC CGACGTGAAC AACCAAGGCA CGCTGATCGG TGGCAACGGC
GGCAACGGAG GTTCTGCCGG GAACCCGGGC GGCGGCGGTG GCGGCGGCGA CGGGTTGCTG
ACCTTGGGCT CCGGTACCCA GGTGACCAAC ATTGGGTCGA TCGTGGGCGG TGTAGGCGGT
GCCAGTGGTG GCGGCGGCAG CACGGCCGGT GCCAGCGGCG CGGGCGTCAA TCTGGCTGCC
GGGTTCAACG TGCTTTCCAA CGTTGGCACG ATCACCGGCG GTGCGGGCAA TGGCGGTGCC
GCGGGCGTGG GTGTCATTAC CAACGGTGAC GTCATCGTCA ATGGCGGCAC CATTAGCGGC
GGCCTGTACA GCGACGGTGT CACGCGGGCG GCTGCCATCC AGTTCAATGG GACGAACAAC
ACGCTGCAAC TGCTGACGGG GTCCAACATC ATCGGCAACC TCGACGTGGC GGCGGGCGCA
GCCGCCAAGA TCACGGCCGG CAGTGCAGGC CTCTCGCTGT CCAACAACGT CACGCTGGGC
GACGCCACGT CGCGTGTCAC GCTCGATTCG ACCACGACGA ATCTCGTTGT TTCAGGCGTC
ATATCGGGCG CGGGCAGCGT GGGCGTCACC GGCAGTCGAA CGATCACGCT GACGGGCGAC
AACACCTACA CGGGCGCTAC TACCATCACC ACCGGCACGC TGCAGATCGG CAACGGTGCG
ACCACCGGCT CGGTGGCGGG CAATATCGTC AACAACGGCA CGCTGGCTTT CAACCGCAGC
GACGCGGTGA CGTACGCCGG CACCATCAGC GGCGCCGGCA ACCTGGTGCA GGCCGGGGCC
GGCATGTTGA CCATCTCGGG CACGGCGGGC TATGCCGGCA GCACGACCAT CAATGCGGGC
ACGCTCGCGT TGTCCGGCGC GGGCAGCATC GCCGCTTCGA GCGGTGTGGT GAACAACGGC
ACGTTCGATA TTTCGGGGAC GACCTCCGGC GCCACCATCA ACGCATTGAC CGGCACGGGC
GCAGTTGCCC TGGGCAGCCG GACACTCACG CTGGCCAACG CAGCCGGCAC GTTCAGCGGC
GCGATTGGCG GGACGGGCGG CCTCACGGTC GCCAATGGCG CGCAAACGCT GTCGGGTGCG
AACGGCTTTA CCGGCGCGAC GACGATCAAC GCCGGCACAC TGGCGTTGAC CGGGGGCGGC
AGCATTGCGG CCTCGAGCGG CGTGGTCAAC AACGGCTCGT TCGATATTTC CGGGACGACC
GCCGGCGCCA CCATCAACGC GTTGAGCGGC TCGGGCGCGG TCGCCCTGGG CAGCCGGACA
CTCACGCTGG CCAATGCAGG CGGCGCGTTT AGCGGCGCGA TCGGCGGTAC GGGTGGCCTC
ACGCTGAATG GCGGCACGCA AACACTGTCC GGCGTGAACA CCTATAGCGG GGCAACGACC
ATCAACGCCG GCACGCTGGC GCTGTCGGGT GCCGGCCGCC TGGCTTCGGC TACGCGCGTC
ACGCTCACGG GGGCCAGTTC GACACTCGAT CTGTCTGCTA GCGGCAACCA GACGGTGGCG
TATCTCTCCG GCGTAGCTGG TAGCCGCGTG GTGCTGAACG GCAGCGCGCT TACGCTGGCC
GACGATTCCT CCCAAACCTT CAGCGGCAGC CTGAGCGGCA ACGGCGCGTT GATCAAGCAG
GGCACGGGCA CGCTCACGCT CAACGGTGTC AGCAGCGGCT TCTCGGGGTC GACCACGGTA
GCGGGCGGCA CCCTGGCCGT TGGCGATGCA GCGAACGCCG GTGCTGTGCT TGGCGGCAAT
GTCCTGGTGA ACGCGCTGGG CACCCTGCGC GGCCATGGCA CGGTTTCCGG CGATGTGAGC
AGCAGCGGGG TGGTCGCGCC GGGCGGCTCC ATCGGAACGC TTTCCGTGGG CGGCAACTAC
ACGCAAGGCT CGACGGGGAT GCTCGCCATC GAAGTCAGCC CCACGGACGC AGCGCAACTG
CGCGTGGGCG GTGCGGCAGC GCTCGGCGGC TCGCTGGCCA TCGTGTTCGA TCCAGGTACC
TATACCGCCC GCCGCTACAC CGTGCTGAGC GCAGTCAGTG GCGTGACGGG GCGCTTCGCA
AACGTCAACA CAGCAACGGC CGGAGCCAAC CTCGGCACGT TACAGACATC GGTGGACTAC
GGAAGGAATG CGGTCGACGT GCTGCTTGCT GAAGCAACAG CGCCCGGCAA CCCAGGCAGT
CCGACCGTCG TGGCGCCGAC AAAGACCACC ATCTACACGG CGCAGGGCAC GACAGCGCTG
CTGCAGGCAC AGGGCGCCAA CGCGGCGCTG CTCGGTCGGG TGTCTGGGCC GCAGGATGCC
CTGGCTGGTT CCAAAGATGT GTGGGTCACG GCCAGCGGCT CCAGCACGAA GGTGGGTGGG
TCGGGCAATG CGCCGGGCTT CCTCACGCAT GCCTATGGGT TCCTCGCGGG CGCGGAGGGC
CGCGTGGGTG CCGCCACCGT TGGCGTAGCG GGCGGCTACA CGCACACCAC GCTCGGCGAA
GACACCACCG GCGCATCGGG CACCATCGAC ACGTTGCGCG TGGCGCTTTA CGGCGCGCAG
CCGATGGGCG CCGTCGATCT ATCGGCAACC GTGGGCTATG GGCTCGATTT CCTCTCGCAG
AAGCGGCCGT TTGGCAGTGT GGGTACCGCT GAGGGCGACC ATCTGGCGCA CGAATTCACC
GCCGCCACGC AGGCCAGCTT GCCCCTGGAG ATGGGCGGCA TCCGGCTCGC GCCACACGTC
GGCATGCGTT ATGCCTATGT GCGCGGCAGC GGCTTCGGCG AGAACGGCGC AAACGGCCAG
AACCTGCAAG TCGGTCCGGA CAGCGCGCGC AGTCTCCAGC CGTATGTGGG CGTCACGCTC
GACAAGGCCT TCGGTGATGT GCGCCCGCTC AACGTGCAGC TTCGCGTGGG CTATGCGCAC
GAGCTGATGA ACGCGGGGCG CGTCGTCCAG GTCCAGAGCC AGGACGGCAC CGCGTTCACC
GCCCCGGGCA CCGATCTGCC GCGTTCGTTC CTGACGACCG GTGCCAGCGT CACGCTTCAG
GCAACCAAGG CAACCACGGT GTCGTTGGGC GTGGATGCGA CCCTCAACAC GAGCCACGTG
TCTACGCAGT CCGCGTATGG GGTTCTAAGC CGGAACCGCC GAAAATTCCG TCAGCCGATC
AACGTGGCTT GTCCCGCGCC CGGTCGATGG GGTAGACCCA ACAGTCGTGT CACTAGCCGC
CATTTCGATC ACGGCAATGC CAGCCGGACG TCACGTCCAG ATTGTTCCGG TCTGGATGAG
GCCGACTGA
|
|---|
| Protein sequence | MNRVYRLVWS RTLRAPQVVS ELTKASRGGV DASGDTTHAR RRASIISIGV SLGLAGAALP
SWAATCSSST IAACSAAGGN GIPNRSGNGG SGNGGGGGSS TLGGGSATVQ VPGGPTSGGT
GGTGATNDSG QGGPGGAPAV VLAGDAVVNA NAQGGSGQAF DGFTFAGGAG GGGAGVYSTG
TSVTVNGGMT VQGGAGGNGG AGTSGPASNG GGGGGGGAAF VIVTPAADVN NQGTLIGGNG
GNGGSAGNPG GGGGGGDGLL TLGSGTQVTN IGSIVGGVGG ASGGGGSTAG ASGAGVNLAA
GFNVLSNVGT ITGGAGNGGA AGVGVITNGD VIVNGGTISG GLYSDGVTRA AAIQFNGTNN
TLQLLTGSNI IGNLDVAAGA AAKITAGSAG LSLSNNVTLG DATSRVTLDS TTTNLVVSGV
ISGAGSVGVT GSRTITLTGD NTYTGATTIT TGTLQIGNGA TTGSVAGNIV NNGTLAFNRS
DAVTYAGTIS GAGNLVQAGA GMLTISGTAG YAGSTTINAG TLALSGAGSI AASSGVVNNG
TFDISGTTSG ATINALTGTG AVALGSRTLT LANAAGTFSG AIGGTGGLTV ANGAQTLSGA
NGFTGATTIN AGTLALTGGG SIAASSGVVN NGSFDISGTT AGATINALSG SGAVALGSRT
LTLANAGGAF SGAIGGTGGL TLNGGTQTLS GVNTYSGATT INAGTLALSG AGRLASATRV
TLTGASSTLD LSASGNQTVA YLSGVAGSRV VLNGSALTLA DDSSQTFSGS LSGNGALIKQ
GTGTLTLNGV SSGFSGSTTV AGGTLAVGDA ANAGAVLGGN VLVNALGTLR GHGTVSGDVS
SSGVVAPGGS IGTLSVGGNY TQGSTGMLAI EVSPTDAAQL RVGGAAALGG SLAIVFDPGT
YTARRYTVLS AVSGVTGRFA NVNTATAGAN LGTLQTSVDY GRNAVDVLLA EATAPGNPGS
PTVVAPTKTT IYTAQGTTAL LQAQGANAAL LGRVSGPQDA LAGSKDVWVT ASGSSTKVGG
SGNAPGFLTH AYGFLAGAEG RVGAATVGVA GGYTHTTLGE DTTGASGTID TLRVALYGAQ
PMGAVDLSAT VGYGLDFLSQ KRPFGSVGTA EGDHLAHEFT AATQASLPLE MGGIRLAPHV
GMRYAYVRGS GFGENGANGQ NLQVGPDSAR SLQPYVGVTL DKAFGDVRPL NVQLRVGYAH
ELMNAGRVVQ VQSQDGTAFT APGTDLPRSF LTTGASVTLQ ATKATTVSLG VDATLNTSHV
STQSAYGVLS RNRRKFRQPI NVACPAPGRW GRPNSRVTSR HFDHGNASRT SRPDCSGLDE
AD
|
|---|
| |