Gene Rpic_1841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1841 
Symbol 
ID6286335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1931392 
End bp1932078 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content58% 
IMG OID642625403 
Producttwo component heavy metal response transcriptional regulator, winged helix family 
Protein accessionYP_001899409 
Protein GI187928922 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR01387] heavy metal response regulator 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.99331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.22676e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGCTCC TTGTTGTCGA AGACGAATCC AAGACCGGCG AATATTTGCA GCAGGGGTTG 
TCGGAAGCCG GCTTTGTTGT GGACCTTGCC CGCAATGGCT TGGACGGCCG ACATCTTGCA
ATGACGGGCG ACTATGACCT CTTGATTCTT GACGTGATGT TGCCCGATCT CGAAGGGTGG
CAGATCCTGC ACGCACTGCG CTCAACTGAA CTGGCTGTGC CGGTGCTGTT TCTGACCGCG
CGCGATAGCG TCGCTGATCG GGTCAAGGGC TTGGAGCTGG GCGCGGATGA CTACATGGTC
AAACCATTTG CATTTGCGGA ATTGCTCGCG CGTGTTCGAA CTCTGCTTCG ACGAGGCAGT
GCGCCATCGC TTGCAGAACG CATCCAGGTG GCCGACCTGG TGCTGGATCT GACTCGCCGT
CGTGCTTCCC GTGGCGGTCA GCGAATCACG TTGACCAGTA AGGAGTTCTC GCTGCTGGAA
CTGCTAGCCC GCCGTCATGG CGAGGTGTTG CCCCGGTCCC TGATCGCCTC CCAAGTCTGG
GACATGAATT TCGACAGCGA CACTAACGTG ATCGACGTCG CCATTCGACG CCTGCGCGCC
AAAATCGACG ATAACTTCGA ACCTAAATTG ATCCATACCG TCCGTGGCAT GGGCTATGTC
CTCGAAGGTC CGGAGGACGG GGAGTAA
 
Protein sequence
MKLLVVEDES KTGEYLQQGL SEAGFVVDLA RNGLDGRHLA MTGDYDLLIL DVMLPDLEGW 
QILHALRSTE LAVPVLFLTA RDSVADRVKG LELGADDYMV KPFAFAELLA RVRTLLRRGS
APSLAERIQV ADLVLDLTRR RASRGGQRIT LTSKEFSLLE LLARRHGEVL PRSLIASQVW
DMNFDSDTNV IDVAIRRLRA KIDDNFEPKL IHTVRGMGYV LEGPEDGE