| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1266 |
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| Symbol | dapD |
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| ID | 6287363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 1354300 |
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| End bp | 1355127 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642624836 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001898842 |
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| Protein GI | 187928355 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.210572 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.245443 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCAAC AACTGCAATC CCTGATCGAC CAAGCGTGGG AAGACCGCGC CAACCTGTCG
CCCAAGTCCG CTCCGGCCGA TGTCCGTGAA GCCGTCGCCA ACGTGATCGG CCAGCTCGAT
CGTGGCGCGC TGCGCGTGGC CGAGAAGCAG GACGGCGAGT GGATCGTCAA TCAGTGGATC
AAGAAAGCCG TGCTGCTGTC GTTCCGCCTG GAAGACAACG CGCCGATGGC TGCCGGCGGC
TTCACGCAGT TCTACGACAA GGTGCCGAGC AAGTTCGCCA ACTACACGGC CGAAGACTTC
GCGGCGGGCG GCTTCCGCGT GGTGCCGCCG GCCGTGGCGC GCCGTGGCTC GTTCATCGCC
AAGAACGCCG TGCTGATGCC GTCGTACGTG AACATCGGCG CCTATGTGGA TGAAGGCACG
ATGGTCGACA CGTGGGCCAC CGTCGGTTCG TGCGCACAGA TCGGCAAGAA CGTCCACCTG
TCGGGCGGCG TGGGCATCGG CGGCGTGCTG GAGCCGCTGC AGGCCAACCC GGTCATCATC
GAAGACAACT GCTTCATCGG TGCCCGCTCG GAAGTGGTGG AAGGCGTGAT CGTTGAAGAA
AACTCGGTGA TCTCGATGGG CGTGTACCTG GGCCAGTCGA CCAAGATCTA CGACCGCGAA
ACCGGTGAAG TCAGCTACGG CCGCATCCCG GCGGGCTCGG TGGTGGTGGC GGGCAACCTG
CCGTCGAAGG ACGGCTCGCA CAGCCTGTAC TGCGCCGTGA TCGTCAAGAA GGTCGACGCC
AAGACGCGCG CCAAGGTTGG CCTGAACGAG CTGCTGCGCG GCGACTAA
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| Protein sequence | MTQQLQSLID QAWEDRANLS PKSAPADVRE AVANVIGQLD RGALRVAEKQ DGEWIVNQWI
KKAVLLSFRL EDNAPMAAGG FTQFYDKVPS KFANYTAEDF AAGGFRVVPP AVARRGSFIA
KNAVLMPSYV NIGAYVDEGT MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII
EDNCFIGARS EVVEGVIVEE NSVISMGVYL GQSTKIYDRE TGEVSYGRIP AGSVVVAGNL
PSKDGSHSLY CAVIVKKVDA KTRAKVGLNE LLRGD
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