Gene Rpic_1263 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_1263 
Symbol 
ID6288791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1352275 
End bp1353435 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content66% 
IMG OID642624833 
Productsuccinyl-diaminopimelate desuccinylase 
Protein accessionYP_001898839 
Protein GI187928352 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 
TIGRFAM ID[TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.103689 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.466202 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCACA TCCAGCCCAC GCTTGCCCTC ACTGAAGACC TGATCCGCCG CCGCTCCGTC 
ACGCCCGAAG ACAAGGGCTG TCAGGACGTG CTGATCGAAC GCCTGACCGC CGCCGGGTTC
GAATGCGAAA CCGTGATCAG CGGCCCGGAC CACTTTCGGG TAACTAACCT GTGGGCGGTC
AAGCGCGGGC GCGCCGGCAC CGACGGCAAG CTGCTCGTGT TCGCTGGCCA CACCGATGTG
GTGCCCACCG GCCCCGTCGA GCAATGGCAC TCCGATCCCT TCGAACCGAC GCACCGTGAC
GGCAAGCTCT ACGCGCGCGG CGCGGCAGAC ATGAAGACGT CGATTGCCGG CTTCGTGGTG
GCCTCGGAAG AATTTGTTGC CAAGCACCCG GACCACGCCG GCTCGATCGG CTTTCTGATC
ACCAGCGACG AAGAAGGCCC GGCGCACGAC GGCACCGTCA AGGTATGCGA CCTGCTCCGC
GCACGCGGCG AGCGCCTCGA TTACTGCGTG GTCGGTGAGC CGACTTCGGT GTCGACCCTC
GGCGACATGG TCAAGAACGG GCGACGCGGT TCGCTGTCGG GCAAGCTCAC CGTCAACGGG
GTACAGGGCC ACATCGCCTA TCCGCATCTG GCCAAGAATC CGATCCACAT GGCTGCCCCC
GCGCTGGCCG AGCTGGCCGC CGCGAAGTGG GACGACGGCA ATGCCTACTT CCCGCCGACC
ACGTGGCAGA TGTCGAATAT TCACGGCGGC ACGGGCGCGA CGAACATCAT TCCCGGCCAC
GTCACGATCG ACTTCAACTT CCGCTTCTCG ACCGCGAGCA CGCCGGACGG CCTGAAGGCG
CGCGTGCACA GCATTCTCGA TGCGCACGGC CTCGACTACA CGCTCGACTG GACGCTGGGC
GGCGAGCCCT TCCTGACCGA GCGCGGCGAG CTGTCCGAAG CCCTCGCCTC CGCCATCCAG
GCCGAGTGCG GCGTGACCAC CGAACTGTCG ACCACGGGCG GTACCTCGGA CGGCCGCTTC
ATCGCCAAGA TCTGCCCGCA GGTGATCGAG TTCGGCCCGC CGAACGCGAG CATCCACAAG
ATCGACGAGC ACGTCGAAGT GGCGTTTATC GAGCCGCTGA AAAACGTGTA TCGCCGCGTC
TTGGAAACGT TGATCGCCTG A
 
Protein sequence
MSHIQPTLAL TEDLIRRRSV TPEDKGCQDV LIERLTAAGF ECETVISGPD HFRVTNLWAV 
KRGRAGTDGK LLVFAGHTDV VPTGPVEQWH SDPFEPTHRD GKLYARGAAD MKTSIAGFVV
ASEEFVAKHP DHAGSIGFLI TSDEEGPAHD GTVKVCDLLR ARGERLDYCV VGEPTSVSTL
GDMVKNGRRG SLSGKLTVNG VQGHIAYPHL AKNPIHMAAP ALAELAAAKW DDGNAYFPPT
TWQMSNIHGG TGATNIIPGH VTIDFNFRFS TASTPDGLKA RVHSILDAHG LDYTLDWTLG
GEPFLTERGE LSEALASAIQ AECGVTTELS TTGGTSDGRF IAKICPQVIE FGPPNASIHK
IDEHVEVAFI EPLKNVYRRV LETLIA