Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1263 |
Symbol | |
ID | 6288791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 1352275 |
End bp | 1353435 |
Gene Length | 1161 bp |
Protein Length | 386 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642624833 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001898839 |
Protein GI | 187928352 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.103689 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.466202 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCCACA TCCAGCCCAC GCTTGCCCTC ACTGAAGACC TGATCCGCCG CCGCTCCGTC ACGCCCGAAG ACAAGGGCTG TCAGGACGTG CTGATCGAAC GCCTGACCGC CGCCGGGTTC GAATGCGAAA CCGTGATCAG CGGCCCGGAC CACTTTCGGG TAACTAACCT GTGGGCGGTC AAGCGCGGGC GCGCCGGCAC CGACGGCAAG CTGCTCGTGT TCGCTGGCCA CACCGATGTG GTGCCCACCG GCCCCGTCGA GCAATGGCAC TCCGATCCCT TCGAACCGAC GCACCGTGAC GGCAAGCTCT ACGCGCGCGG CGCGGCAGAC ATGAAGACGT CGATTGCCGG CTTCGTGGTG GCCTCGGAAG AATTTGTTGC CAAGCACCCG GACCACGCCG GCTCGATCGG CTTTCTGATC ACCAGCGACG AAGAAGGCCC GGCGCACGAC GGCACCGTCA AGGTATGCGA CCTGCTCCGC GCACGCGGCG AGCGCCTCGA TTACTGCGTG GTCGGTGAGC CGACTTCGGT GTCGACCCTC GGCGACATGG TCAAGAACGG GCGACGCGGT TCGCTGTCGG GCAAGCTCAC CGTCAACGGG GTACAGGGCC ACATCGCCTA TCCGCATCTG GCCAAGAATC CGATCCACAT GGCTGCCCCC GCGCTGGCCG AGCTGGCCGC CGCGAAGTGG GACGACGGCA ATGCCTACTT CCCGCCGACC ACGTGGCAGA TGTCGAATAT TCACGGCGGC ACGGGCGCGA CGAACATCAT TCCCGGCCAC GTCACGATCG ACTTCAACTT CCGCTTCTCG ACCGCGAGCA CGCCGGACGG CCTGAAGGCG CGCGTGCACA GCATTCTCGA TGCGCACGGC CTCGACTACA CGCTCGACTG GACGCTGGGC GGCGAGCCCT TCCTGACCGA GCGCGGCGAG CTGTCCGAAG CCCTCGCCTC CGCCATCCAG GCCGAGTGCG GCGTGACCAC CGAACTGTCG ACCACGGGCG GTACCTCGGA CGGCCGCTTC ATCGCCAAGA TCTGCCCGCA GGTGATCGAG TTCGGCCCGC CGAACGCGAG CATCCACAAG ATCGACGAGC ACGTCGAAGT GGCGTTTATC GAGCCGCTGA AAAACGTGTA TCGCCGCGTC TTGGAAACGT TGATCGCCTG A
|
Protein sequence | MSHIQPTLAL TEDLIRRRSV TPEDKGCQDV LIERLTAAGF ECETVISGPD HFRVTNLWAV KRGRAGTDGK LLVFAGHTDV VPTGPVEQWH SDPFEPTHRD GKLYARGAAD MKTSIAGFVV ASEEFVAKHP DHAGSIGFLI TSDEEGPAHD GTVKVCDLLR ARGERLDYCV VGEPTSVSTL GDMVKNGRRG SLSGKLTVNG VQGHIAYPHL AKNPIHMAAP ALAELAAAKW DDGNAYFPPT TWQMSNIHGG TGATNIIPGH VTIDFNFRFS TASTPDGLKA RVHSILDAHG LDYTLDWTLG GEPFLTERGE LSEALASAIQ AECGVTTELS TTGGTSDGRF IAKICPQVIE FGPPNASIHK IDEHVEVAFI EPLKNVYRRV LETLIA
|
| |