| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1228 |
|---|
| Symbol | |
|---|
| ID | 6287195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1316080 |
|---|
| End bp | 1317807 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642624798 |
|---|
| Product | thiamine pyrophosphate protein |
|---|
| Protein accession | YP_001898804 |
|---|
| Protein GI | 187928317 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.299499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.940009 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACAC CAGCCGCACG CCCCGCCAGC CTTGTCGTTG AGCCCCGCCA CGGCGGCCAG
ATTCTTGTTG ATGCACTGCT GGCCCATGGC GTCGACATGG CCTTCGGCGT GCCCGGCGAG
AGCTACCTGT CTGTGCTCGA AGGCTTTTAT CAGCGCCGCG ACCGCGCACG CTTCATCGTC
TGCCGGCAAG AGGGCGGTGC GGCCAACATG GCGGATGCGT ACGGCAAGCT CACCGGCCGC
CCCGGCATCG TCTTCTGCAC GCGCGGGCCG GGCGCCACCA ACGCCAGCAT TGGCGTACAC
ACTGCGTTTC AGGACTCCAC GCCGCTGATC CTGTTCATCG GCCAGGTCGG CCGCGATTTC
GTCGACCGGG AAGCGTTTCA GGAAATCGAC TACCGCCGCA TGTTCGGCCA GATGGCCAAG
TGGGTCGCGC AGATCGATAG CGTCGAACGC ATCCCCGAAT ACATCGCACG CGCCTTCCAG
ACTGCCACCG CCGGCCGCCC CGGCCCGGTT GTGCTGGCGC TGCCCGAAGA CATGCTGACC
GACGTCGCCA CCGTGGCTGA TGTGCCGCCC GAGGTGGCAA CGAAAGCCCG CGCGATGGCG
TGGCCCAGCC CGCATGATCT TGCCCGGCTG AAGACGCTGC TGCAGGACGC CGAGCGCCCG
ATGCTGCTGC TGGGCGGTTC CGGCTGGACG CCGCAAGCCG CCGCCCGCAT GCAGGCCTTT
GCCGAGCGCT GGAATCTGCC CGCAGGCTGC GTGTTCCGTC GGCAAGACCT GTTCGACAAC
CGCCACCCCA ATTACGCCGG TGATGTCGGT ATCGCCATCA ACCCGAAGCT CGCGGCGCGC
GTGAAAGACG CCGACGTCGT GCTTGCCATC GGCACACGCC TGGGCGAAAT GACGACCTCG
GGCTACACGC TCTTCGATGT GCCGCGCCCG AAGCAGACGC TCGTCCACGT GCACGCCGGT
GCGGAAGAGT TGGGACGCGT CTACCAGGCT GATCTGATGA TCCACGCGTC GATGCCCGCG
ATTGCCGAAG CGCTGGATGG CGTGTCGCCT GATGCGCCGC CGCGTTGGTC CGCCTGGACA
GAAGCCGCCA ATGCCGATTA CCGCGCCAAC ATCGTGCCAC CGCCGTTTGG CGGCAAGGGC
ATCGACATGG CCCGCGCCAT GCAATGGCTG CGCGAGCGCC TGCCTCGCCA CAGCATCTTG
ACCAACGGCG CAGGCAACTA CGCCACGTGG CTGCATCGCT TCTATCAATA CGGTGCGCTG
GCGGCAGGCT CGCGAACGCA ACTCGCCCCC ACGAGCGGGG CGATGGGCTA TGGCGCCCCC
GCTGCGGTGG CCGCCAAGAT CGTCAGCCCC GACACGCCCG TCATCTGCAT GGCCGGTGAC
GGTTGCTTCC TGATGAACGG CCAGGAACTG GCGACCGCCA TGCAGTACAA CGCGCCGGTG
ATCTTCATCG TGGTCAACAA CGGCATGTAC GGCACCATCC GCATGCACCA GGAACGCGAG
TACCCCGAGC ACGTGAGCGG TACCGAGCTG CGCAACCCGG ACTTCGCCGC ATTGGCCAGA
GCCTACGGCG CCGAAGGGCA TACGGTGCGC TCGCTTGAAG GCTTCCAGTC TGCGGTGGAG
ACGGCACTTG CCGCGCTTGT GGCGAGCATC ATCGAAGTGC AGACCGATCC GAACATCATC
AGCCCACGCG CGACGATCGA TTCGTTGCAT GCACAGTCAC GCAGTTGA
|
|---|
| Protein sequence | METPAARPAS LVVEPRHGGQ ILVDALLAHG VDMAFGVPGE SYLSVLEGFY QRRDRARFIV
CRQEGGAANM ADAYGKLTGR PGIVFCTRGP GATNASIGVH TAFQDSTPLI LFIGQVGRDF
VDREAFQEID YRRMFGQMAK WVAQIDSVER IPEYIARAFQ TATAGRPGPV VLALPEDMLT
DVATVADVPP EVATKARAMA WPSPHDLARL KTLLQDAERP MLLLGGSGWT PQAAARMQAF
AERWNLPAGC VFRRQDLFDN RHPNYAGDVG IAINPKLAAR VKDADVVLAI GTRLGEMTTS
GYTLFDVPRP KQTLVHVHAG AEELGRVYQA DLMIHASMPA IAEALDGVSP DAPPRWSAWT
EAANADYRAN IVPPPFGGKG IDMARAMQWL RERLPRHSIL TNGAGNYATW LHRFYQYGAL
AAGSRTQLAP TSGAMGYGAP AAVAAKIVSP DTPVICMAGD GCFLMNGQEL ATAMQYNAPV
IFIVVNNGMY GTIRMHQERE YPEHVSGTEL RNPDFAALAR AYGAEGHTVR SLEGFQSAVE
TALAALVASI IEVQTDPNII SPRATIDSLH AQSRS
|
|---|
| |