| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1123 |
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| Symbol | |
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| ID | 6286672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 1199552 |
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| End bp | 1200841 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642624696 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001898703 |
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| Protein GI | 187928216 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.911317 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.519674 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACA ACAAGCCCCA AGCCGCACCG TCCGCTGCTC CCGCGCCCGC AGCCCCCGCG
GCAACGCCTA CCGGCAACGG CAACGGCAAC GGCAAGCGCA AGCGCATGCT GACCACGCTG
GCCGCCGCAC TGGTGGTTGC CGGCGTCGGC TACGGCCTCT ACTGGGGCCT GTACGGCCGC
TGGTTCGAGT CGACCGACGA TGCATACGTG CAAGGCAACG TGGTCCAGGT GACACCGCAA
GTGGCTGGTA CCGTGGTCGC CATTCGCGCC GATGACACGC AACTCGTCAC CTCTGGCCAG
CCCGTGATCG AACTGGACCG GGCCGATGCA CGCGTCGCGC TGGAGCAGGC CGAAGCCGCG
CTCGCACAAA CGGTGCGCCA GGTGCGCACG CTGTACTCGA ACACCAGCGC GTTCACCGCC
ACGATGGCCA TGCGTGAAAG CGATCTCGCC AAGGCCAAGG ATGACTTGGC CCGCCGCAAG
CAGATCGCCG GTACGGGCGC CGTGTCGCAG GAAGAAATCT CGCACGCACA AACCGCCGTG
CAGGCTGCGC AGTCCGCGCT GGAAGCCGCC AAGGAACAGC TGCAAGGCAA CCGTGTGCTG
ACGGAACAGA CCACGCTGGA GCGTCATCCG AACGTGCTGC AGGCTGCCGC CAAGGTCCGC
GAGGCTTACC TGGCCTATGC GCGTACTAGC CTGCCGGCAT CGGTCACGGG CTATGTGGCC
AAGCGTTCGG TGCAGGTCGG CCAGCGCGTC GCTCCTGGCA CGCCGCTGAT GGCCATCGTG
CCGCTGGATC AGCTCTGGGT GGACGCCAAC TTCAAGGAAG TCCAGGTGCG CCACATGCGC
GTGGGCCAGC CGGTTGAACT GGTGGCCGAC GTGTATGGCA GCAGCGTGAC GTACCACGGC
AAGGTGGTCG GTTTCTCGGC GGGTACGGGC TCGGCGTTCT CGCTGTTGCC GGCACAGAAC
GCCACCGGCA ACTGGATCAA GGTCGTGCAG CGCCTGCCGG TGCGCGTGTC GCTCGATCCA
AAGGAATTGA AGGACCATCC GCTGCGCGTG GGTCTGTCGA TGGAAGCCAA GGTCGACATC
CATGACGAAG GCGGGCAGAG CCTGGCCACC GCACCGGCTG CGTCGCCGCT ACAAACGACG
GTGTACGACC AGGCCGGCAA GGACGCAGAT CAGGTCATCG CCAGCATCAT CGCCGCCAAC
GCTGGCCGAG GCGGCGCCAC GGCACCGGCC GCCGCCAACG TGCCGGCCGC ATCGGCTCCG
CGCACTTCGC AACCCGCACC CAAGGTCTGA
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| Protein sequence | MSDNKPQAAP SAAPAPAAPA ATPTGNGNGN GKRKRMLTTL AAALVVAGVG YGLYWGLYGR
WFESTDDAYV QGNVVQVTPQ VAGTVVAIRA DDTQLVTSGQ PVIELDRADA RVALEQAEAA
LAQTVRQVRT LYSNTSAFTA TMAMRESDLA KAKDDLARRK QIAGTGAVSQ EEISHAQTAV
QAAQSALEAA KEQLQGNRVL TEQTTLERHP NVLQAAAKVR EAYLAYARTS LPASVTGYVA
KRSVQVGQRV APGTPLMAIV PLDQLWVDAN FKEVQVRHMR VGQPVELVAD VYGSSVTYHG
KVVGFSAGTG SAFSLLPAQN ATGNWIKVVQ RLPVRVSLDP KELKDHPLRV GLSMEAKVDI
HDEGGQSLAT APAASPLQTT VYDQAGKDAD QVIASIIAAN AGRGGATAPA AANVPAASAP
RTSQPAPKV
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