Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1039 |
Symbol | |
ID | 6287158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 1104529 |
End bp | 1105917 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642624611 |
Product | Carbohydrate-selective porin OprB |
Protein accession | YP_001898619 |
Protein GI | 187928132 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.661938 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTCGC TGCCTCTTCA CGTCATCCCT CGCCGTCCAT TCACTCTGAT GGGAGCCGTG CAACAAGCCA CGGCGGCCTT CATGCTCGTA TTGAGTCTGC AAAGCGCTGC GCTGGCGGCT GGCGCCGATA CGCCTGCCAC GGACATCCCA GAGCCGGAGC GATGGAACGT GCATGGACAG TTCACCAATG TGACGCAATG GCATCCGTCG TTCCGCTCGC CGTACAGCGG CACCAATAGC CTCACGCCTG ACAACAACAC CAAGGAGACG GTCGACGTCA CGCTCTACCT CGGGCTGCGC CTGTGGAAGG GTGCCGAGCT GTACGCGAAC CCGGAAATCG ACCAAGGTTT CGGACTAAGC AATACGGTCG GCCTGGCCGG CTTCTCAAGC GGGGAGGCCT ACAAGATCGG CAACAATGCT CCCTACCGCA AGCTGCCGCG CTTGTTCCTG CGGCAGGTCA TCAATCTCGG CGGCGAGCAG CAGGCAGTAG AGTCAGCCCC CAACCAGCTT GCCGGCAGCC GCTCGGCAGA CAACGTCACC ATCACCGTCG GCAAGTTCTC GGTGGCAGAC ATATTCGACA CGAACACGTA CGCGCACGAC CCGCGGGGCG ATTTCCTGAA CTGGGCGGTG ATCGATGCCG GCGCATTCGA CTATGCAGCG GACGCCTGGG GCTACACGCA TGGTCTGGCG GTGGAATGGA CGCAATCGTG GTGGTCGCTG CGCGGCGGAC TCTTCGCGCT TTCGATGGTA CCCAACAGTG TCACGATCGA CACCACGTGG AAGCAGTACC AGTGGGTGGG CGAATTTGAA GCGCGCCATG ATTGGTTCGG CCGCCCGGGC AAGGTCAAGC TGCTCGCCTT TGCAACGCGA GGCCGGATGG GTGGTTATGG CGATGCGGTC AACCTCGCCC AACAGACGGG CAACACGCCG GACACGGGCC TCGTGCGGCG CCTCGCCTGG CGCCCCGGTG TTGCCTTGAA CCTGGAGCAG GAAATCACCT CCGACCTGGG CGTCTTCGCA CGGGCCAGCA TGAACGACGG CAGCAAGGAA ACATTCGAGT TCACCGACAT CAACCAGTCG GTGTCGGCCG GGTTCTCCCT GAAAGGCAAT CGTTGGGGAC GCCCGAACGA CACGTTCGGT GCCGCCGTGG TGGTGAACGG CTTGTCGCGC GCGGCACGCC AATATTTCGC GGCCGGCGGC ATGGGCGTAC TGATTGGTGA TGGCGCCCTC AACTACGGCA CCGAACGCAT CGCCGAGCTG TACTACAACT GGGCGGCCAT CAAACACCTC ACGCTGGGCC TGAACTACCA GTATGTGGTC CATCCGGCGT ACAACCGGGA TCGCGGCCCG GTATCAATCG TCGGGGCACG CGTCCACGCT GAATTTTAA
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Protein sequence | MPSLPLHVIP RRPFTLMGAV QQATAAFMLV LSLQSAALAA GADTPATDIP EPERWNVHGQ FTNVTQWHPS FRSPYSGTNS LTPDNNTKET VDVTLYLGLR LWKGAELYAN PEIDQGFGLS NTVGLAGFSS GEAYKIGNNA PYRKLPRLFL RQVINLGGEQ QAVESAPNQL AGSRSADNVT ITVGKFSVAD IFDTNTYAHD PRGDFLNWAV IDAGAFDYAA DAWGYTHGLA VEWTQSWWSL RGGLFALSMV PNSVTIDTTW KQYQWVGEFE ARHDWFGRPG KVKLLAFATR GRMGGYGDAV NLAQQTGNTP DTGLVRRLAW RPGVALNLEQ EITSDLGVFA RASMNDGSKE TFEFTDINQS VSAGFSLKGN RWGRPNDTFG AAVVVNGLSR AARQYFAAGG MGVLIGDGAL NYGTERIAEL YYNWAAIKHL TLGLNYQYVV HPAYNRDRGP VSIVGARVHA EF
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