| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1034 |
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| Symbol | |
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| ID | 6286591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1097133 |
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| End bp | 1100654 |
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| Gene Length | 3522 bp |
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| Protein Length | 1173 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642624606 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001898614 |
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| Protein GI | 187928127 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0891257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.693052 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATC ACGCTTACGA ATGCGACGGC GCACCCGTCT CGCCTGAAGC CTTCTCGCGC
GCTGCGTGCG AACCGCAGCG CTCGGTCGTG GTGGAAGCAT GTGCGGGCAG CGGCAAGACG
TGGCTGCTGG TCACGCGTAT GTTGCGCTTG CTGCTGGCGG GCGCCGCGCC GTCGGACATT
CTCGCCATCA CGTTCACGCG CAAGGCCGCC GAAGAAATGC GCCAGCGTTT GCTGGACATC
CTCGCGCAAC TGGCCGCCGC CGACGATGAG GGCGTCGTGC GCGAACTCGT CGCGCGCACG
GTGGACGAGC GCGATGCGCC GGCGCTGATT GAAACCGCGC GAGGCTTGTA TGCGCGCGTG
CTGGAGTCGC CCTCGCGCAT GGCGATCGAT ACGTTCCACG GCTGGTTCGG GTCGCTGCTG
CGCGGTGCGC CGCTGTCGTC GGGGGTGCAG CAGGGCGCGT CGTTGCGTGA AGATGCCGGA
CGGCTGCGGC GTGAAGCGTG GGCGCCTTTC TGGCGCGGCC TGCTGGCGGA AGATCACGCT
GAGTTGCGCG CCGCGTATGA AACGCTTGCC GATCTGGTCG GCGATTTCCA GGCCGGTCGC
CTGCTCGATG CAATGTTTCA TCAGCGCAGC GATTGGTGGG CGTACAAGGC GCAGGCGGGC
GGCCGTCCGC TGGCTGCGTT GGACGAACTG CTTGGCGACG ATGCGACGGT CGATCCGTTG
ATCGAAGCGC TGCAGGATGC GGCATTGCTG GCCGACATGC TGCACGTGTC CGGCTGGCTT
GGGCAGGGCG GTGCGGCCGA AGGCAAGCGC GCGGTGGCCA TCGAATCGGC GGTGACTGCT
GCGCGCGGAA TGGATGTCTC TGATGAAGCC GCGCGCGTAC GAGCATTTGA TGCGCTCTTT
GCGGCCTTCC ACACGCAGGC CGGCAAGGCG CGTGCCTGCA AGCCGACCAA GGCACTGATC
AAGGCCGTCG GCGACGAACA CGCGCGAACG CTGGTGACCC TGCACACTGC GCTCTGCGAG
GCGCTGACCA CCATCCAGGC GCGGCGCCAG GAAGCCCGCG TGCGCGCCGC CAATGCTGCA
TTGTTCGCTC TGGGTGACGC ACTCATCGAT CGCTACCAGG CGTACAAACG TCAGACGCGC
GCGATGGATT TCACCGATCT CGAATGGGAA GCGGCGCGCC TGATGCAGCA AGACGACACG
GCCGCCTACC TGCAGGTGCG GCTCGACGCG CGCTACAAGC ATCTGCTGCT CGACGAGTTT
CAAGATACGA ACCCGATGCA GTGGCGCATC CTGCAAGGCT GGCTGGCCGG TTATGCGGGC
ACCGGCACGC AGCCGAGCGT ATTCCTGGTG GGCGATCCCA AGCAATCGAT CTACCGTTTC
CGTCGTGCGG ATGCCCGGCT GTTCGATGCT GCGCGTGAAA TGCTGGTCGC AGAATTCAAC
GCGACCGTGC TGCGCACCAA CCGCACGCGT CGCAACGCGC CGGCGGTGCT GGAGTGGGTT
AACGCCGTGT TCCTGCAGGC GCGGGCGCGC GGCGACTATC CCATCTACGC CGAGCAAAGC
ACGGCCGTGG ATGCGCCTGT AGGCAAAGCG CTGCTGTTGC CGCTGGTGCC CGTGTTGGAA
GCCGAGCGGG TCGACGAAAC CACGCCACGC GACACGCTTA CCGAACCGCG CGAAGAGGCC
GGCGATTCGC AGCGATATGC AGAGGGCCGC CAAGTAGCCG CCTGCCTGCG CGCGTTGCAC
GCCAGCGAGC GCATTCGCGA AGGCGGCGTC GAGCGCTCCG TGCGCTGGAG CGATTTCCAG
CTGCTCGTCC GCCGCAAGCG CTACCTCGCC GATTACGAAC GTGCGCTGCG CGACGCCGGC
GTGCCGTATC TGAGCCCGCG CCGTGGCGGT CTGCTGGCGA CGCTCGAAGC CCTCGATCTG
TGCGCGCTGC TTGATTTTCT GATGACGCCG CAGGCCGATC TGTCGCTTGC ACATGTGCTG
CGCAGCCCGG TGTTCGCCGC CACGGACGAT CACCTCATCG CACTGGCGCA GTTTGGCGAA
GGCACTCTCG CATTGACATG GTGGGAGCGG TTGACTGCCT TGGCCGGTCA GGCTGATGCG
TCGGACACCT TCCACTATGC GCATCGCATG CTGTCGCGCT GGCTGGCGGT GGCGCCCACG
CTGCCCGTGC ACGATCTGCT CGATCACATC GTCTACACCG GCGAACTCAA GCGCCGCTAT
GCCGAACGCG CGCCCGCCGC CAATCGCGAT CAAGTGCTCG CCAACCTGGA TGCGTTTTTG
AAGCTCGCCC TCGATCTGGA CGGTGGCCGC TATCCGAGCC TGCCGAAGTT CATGGCGGAG
CTGCGGGCCA TCCGCCAGGG CGACGAGGAC GAAAGTCCCG ACGAAGGCAT GCAGGGCGAC
ACCGATGCGC CGGATGCCAT CGATGCCGAA GTTGCCAGCG AAGGCCTCGA TGCCGCACAG
ATACTGACCG TACATGCCTC GAAGGGGTTG GAAGCGCCGT TCGTCGTGCT GCTCGACAGC
CACCATAGCG ACGCGCGTGT CGATACCGCC GGCATCCTGA TCGACTGGCC GCCGGGCGCG
CAGGCACCTA CGCATTTCTC CGCGTTTGGC AAGACGTCCG AGCGGGGCCT CGCACGCGAT
CCGCTCTTCA AGCAAGAACA TGATCTCGCC GAGCGCGAGA ACTGGAATCT GCTTTACGTG
GCGATGACGC GCGCGCGACA AGCGTTGATC GTTTCCGGCG TCGCAAACAA GCGTGATGCC
GCTGCAGCCC AATCTGTCGA TGAGGGCGAC GCGCCCGAAG TGGACGGCAC GGCGAGCTGG
TACACACACC TTGCCACGGC GGGCGTGGCG TCACCCGCGC CCATGGTGGA TGGCGCAGCC
GATTCGGCTG ACAATGCGGC AGGGCCTGAG GCAGTCTCCT ATCACGACTT CCGCGCGCCG
CTTACGGTGA CAGTGCGTGT CGGCGCCGCT GGCGCATCCG CCGAGGGCCC CGCCGATATC
GTCTTCGACC AAGGCGCCGT CGCACAGGGC GAACTGCTGC ATGCGGTGCT CGAGCGCCTG
ACGCGTCGCG GCTTGCCCGA ACAGGCGCCC GACGCTGAGA CGATCGCGCG CTGGTTCAGC
GCCACCGGCG TCACGCAGGC CGACGCCACA CGCACCGCTG ACGCCGTGCG CAGAATGTTT
TCAGCCGAGA CGCTGATGCA TGTCTTCGAC CCTGCGTGTT TCGACGCCGC ACATAACGAG
ATCGAGCTTT TCGCTCCGGA CGGTGCGCTG TTGCGCATCG ATCGCCTGAT CGAACGCGGT
AACGACATCC TCGTGGTCGA CTACAAGCTG CGCCTGCTGC CCGTCGAACG CGCCGCCTAT
GCGGATCAGC TGCGCGGCTA TGTGGCCGCC ATCTCGCCGA TGTACCCGGG TCGCAACGTG
CGCGCGGGCG TCGCCACCGC GCAGGGCGAA TGGATCGACC TGGACGCGTT ACCCAAGCCG
GTACAGACGT CACACGACGA CAGCCAAGGC GCGCTGTTCT GA
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| Protein sequence | MSDHAYECDG APVSPEAFSR AACEPQRSVV VEACAGSGKT WLLVTRMLRL LLAGAAPSDI
LAITFTRKAA EEMRQRLLDI LAQLAAADDE GVVRELVART VDERDAPALI ETARGLYARV
LESPSRMAID TFHGWFGSLL RGAPLSSGVQ QGASLREDAG RLRREAWAPF WRGLLAEDHA
ELRAAYETLA DLVGDFQAGR LLDAMFHQRS DWWAYKAQAG GRPLAALDEL LGDDATVDPL
IEALQDAALL ADMLHVSGWL GQGGAAEGKR AVAIESAVTA ARGMDVSDEA ARVRAFDALF
AAFHTQAGKA RACKPTKALI KAVGDEHART LVTLHTALCE ALTTIQARRQ EARVRAANAA
LFALGDALID RYQAYKRQTR AMDFTDLEWE AARLMQQDDT AAYLQVRLDA RYKHLLLDEF
QDTNPMQWRI LQGWLAGYAG TGTQPSVFLV GDPKQSIYRF RRADARLFDA AREMLVAEFN
ATVLRTNRTR RNAPAVLEWV NAVFLQARAR GDYPIYAEQS TAVDAPVGKA LLLPLVPVLE
AERVDETTPR DTLTEPREEA GDSQRYAEGR QVAACLRALH ASERIREGGV ERSVRWSDFQ
LLVRRKRYLA DYERALRDAG VPYLSPRRGG LLATLEALDL CALLDFLMTP QADLSLAHVL
RSPVFAATDD HLIALAQFGE GTLALTWWER LTALAGQADA SDTFHYAHRM LSRWLAVAPT
LPVHDLLDHI VYTGELKRRY AERAPAANRD QVLANLDAFL KLALDLDGGR YPSLPKFMAE
LRAIRQGDED ESPDEGMQGD TDAPDAIDAE VASEGLDAAQ ILTVHASKGL EAPFVVLLDS
HHSDARVDTA GILIDWPPGA QAPTHFSAFG KTSERGLARD PLFKQEHDLA ERENWNLLYV
AMTRARQALI VSGVANKRDA AAAQSVDEGD APEVDGTASW YTHLATAGVA SPAPMVDGAA
DSADNAAGPE AVSYHDFRAP LTVTVRVGAA GASAEGPADI VFDQGAVAQG ELLHAVLERL
TRRGLPEQAP DAETIARWFS ATGVTQADAT RTADAVRRMF SAETLMHVFD PACFDAAHNE
IELFAPDGAL LRIDRLIERG NDILVVDYKL RLLPVERAAY ADQLRGYVAA ISPMYPGRNV
RAGVATAQGE WIDLDALPKP VQTSHDDSQG ALF
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