Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_1023 |
Symbol | |
ID | 6286702 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 1083524 |
End bp | 1084870 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642624595 |
Product | MATE efflux family protein |
Protein accession | YP_001898603 |
Protein GI | 187928116 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00302987 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.449754 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTTGTCG CCGACGTCCG CCGCATTACC GCACTGGCTT GGCCGGTGCT GATCGGCCAG TTGGCGGTCA TCGCTTTCGG CGTACTCGAT ACGGCGATGG CTGGCCGCGC GACTGCAGCA GACCTCGCGG CCATCGGACT CGGCGGGTCG ATCTACGTGA CGGTGTACAT CAGCCTGATG GGTGTGCTGC AAGCGCTCTC GCCCATCGCC GGCCAACTGT ATGGCGCGCA AAGGCACAGC GAGATCGGCG AAGAAGTGCG CCAGGCTGTC TGGCTCGGGC TGGTGCTCGC GGCTATCGGC ATGCTGATCC TGTGGTTCCC TGCGCCGCTA CTGCAACTGG CGGATGCGAC ACCGGAACTC ACCGAGAAAG CCACCGCCTA TTTGCGGTAT GAAGCACTCG CATTGCCTGC TGCGCTCGGC TTCCGGATCT ACTCTGCGTT GAACAACGCG CTGTCGCGCC CAGTGATGGT GACGGTGCTG CAGCTCGCCG GCCTCGCCAT CAAATTTCCG CTCAACGCAC TGTTTCTGTA CGGCGGCATG GGCGTCCCCG CGATGGGTGG CCCGGGCTGT GCACTCGCCT CGATGATTAT CAGCTGGCTA TGGTTTGTGG CTGCGGCCGC CATCCTGATG CGCAATCCAG CGTACAAGCC GCTTGCGATT TTCACGCACT ACTCGCCACC CAATCGCGCG CGGCTGTGGG CACTCGTACT CCTGGGTGTG CCGATGGGCT TCACCTACCT GATCGAGATC ACATCGTTCA CGTTGATGGC GATCTTCATC GCGCGTCTCG GTACGGTGGT CTTGGCAGGG CATCAGATTG CCGCCAACCT CGGGGCAGTG GCCTACATGG TGCCGCTGTC CTTGTCGATC GCGACGTCGA CGCTGGCTGC GCAGTCGATC GGCGCGCGCG ATCGCGTTGC GGCCCGACGC ATCTCGCTGA ACGGCATCAA ATTGGCGGTG ATGTGCGCGA TCATCGTTTG CGCGGCCGTG CTGTTCTTGC GTCGCGAGCT GGTCAGCCTC TACACGCACG ATGCTACTGT CCTGGCGATT GCGGTGCCGC TGCTGCCTTT CATCGCCTTC TATCAGATGT TCGATGCGCT GCAGGTCATG ACTGCATTCA TCCTGCGCGC ATACAAGATC GCGCTCATCC CGACCGTCAT CTACGCCTTA TCGCTGTGGG GCGTGGGTCT GGGCGGCGGC TACGTGCTCG GATTTGGACT ACTGGGCGAG TTTGCGACGC CTCTGCGTGG CGCAGCCGGC TTCTGGGCGG CCAATGCGCT CAGTTTGATG GTGGCCGGCG CGTTGCTGGT CAGCTATTTC AATCGAGTTA GCCGTGCGCC CGATTAA
|
Protein sequence | MFVADVRRIT ALAWPVLIGQ LAVIAFGVLD TAMAGRATAA DLAAIGLGGS IYVTVYISLM GVLQALSPIA GQLYGAQRHS EIGEEVRQAV WLGLVLAAIG MLILWFPAPL LQLADATPEL TEKATAYLRY EALALPAALG FRIYSALNNA LSRPVMVTVL QLAGLAIKFP LNALFLYGGM GVPAMGGPGC ALASMIISWL WFVAAAAILM RNPAYKPLAI FTHYSPPNRA RLWALVLLGV PMGFTYLIEI TSFTLMAIFI ARLGTVVLAG HQIAANLGAV AYMVPLSLSI ATSTLAAQSI GARDRVAARR ISLNGIKLAV MCAIIVCAAV LFLRRELVSL YTHDATVLAI AVPLLPFIAF YQMFDALQVM TAFILRAYKI ALIPTVIYAL SLWGVGLGGG YVLGFGLLGE FATPLRGAAG FWAANALSLM VAGALLVSYF NRVSRAPD
|
| |