| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_1015 |
|---|
| Symbol | |
|---|
| ID | 6287289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1074192 |
|---|
| End bp | 1075244 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642624584 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001898595 |
|---|
| Protein GI | 187928108 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4174] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.939942 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0094028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCGT ACCTGATCAA ACGGTTGCTG CTTCTGATCC CGACGCTGAT CGGCGTGGTC
ACGCTGACGT TCGTCGTGAT CCAGTTCGTG CCTGGCGGCC CCATCGAACA GATGATGATG
GAGATGAAGG GGCGAGGCGG CGGAGGCGAG GCCAGCGGTG GCGGCGCGTT CGACTATCGC
GGGCGTCGCG GCGTAGACGC CGAGAAGATC AAGGAAATCC GCGCGTTGTA TGGCTTCGAC
AAGAGCCCCG TCGAGCGCTA CTTCCTGATG CTCGGCCGCT TTGCGCGCTT CGACTTGGGC
GAGAGCTATT TCCAGCACCG CAGCGTGTGG GATCTCATCA AGTCGAAATT GCCGGTATCG
ATTTCGATCG GGTTGTGGAC GTTCTTTCTC ACGTACCTGA TAGCTGTGCC GCTCGGCATT
GCGAAGGCCG TGCGTGCGGG CAGTCGGTTT GATCTGGTGA CGAGCATCAT CGTGCTGGTG
GGGTATGCCA TCCCGGGCTT CGTGCTGGGC GTGCTGCTGC TGGTGCTCTT TGGTGGCGGC
ACGTTCTTCC AGTGGTTCCC GATCCGGGGC ATCACTTCCG ACAACTGGGA TCAGCTCAGC
CTGCTCGGCA AAATCACGGA TTACCTTTGG CACATCACGC TGCCTGTCAT GGCGTCGGTG
GTGGGCAGCT TTGCCGTCAT CACCATGCTG ACGAAGAACG CGTTCCTGGA GGAAATCCGC
AAACAGTATG TGCTGACCGC GCGTAGCAAG GGCTTGTCGG AGCGGCGCGT GCTGTGGAAG
CACATTTTCC GCAACGCGTT GCTGCCGCTG GTGACGGGCT TCCCGTCGGC CTTCATTGGC
GCATTCTTCA CAGGTTCGCT GCTCATCGAG CAACTGTTCT CGCTTGATGG CATGGGCCTG
CTGTCGTATG AGGCGGTGAT GCGACGCGAT TATCCGGTCG TGCTCGGCAC GCTGTACTTG
TTCACGCTGA TTGGCCTGGC TGCGCGGTTG ATTTCCGACG TGTGCTACGT GCTGGTTGAT
CCGCGTATCC ATTTCGGCTC GGTTGGGCGA TAG
|
|---|
| Protein sequence | MFAYLIKRLL LLIPTLIGVV TLTFVVIQFV PGGPIEQMMM EMKGRGGGGE ASGGGAFDYR
GRRGVDAEKI KEIRALYGFD KSPVERYFLM LGRFARFDLG ESYFQHRSVW DLIKSKLPVS
ISIGLWTFFL TYLIAVPLGI AKAVRAGSRF DLVTSIIVLV GYAIPGFVLG VLLLVLFGGG
TFFQWFPIRG ITSDNWDQLS LLGKITDYLW HITLPVMASV VGSFAVITML TKNAFLEEIR
KQYVLTARSK GLSERRVLWK HIFRNALLPL VTGFPSAFIG AFFTGSLLIE QLFSLDGMGL
LSYEAVMRRD YPVVLGTLYL FTLIGLAARL ISDVCYVLVD PRIHFGSVGR
|
|---|
| |