| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0988 |
|---|
| Symbol | |
|---|
| ID | 6287197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 1043217 |
|---|
| End bp | 1044413 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642624556 |
|---|
| Product | NlpBDapX family lipoprotein |
|---|
| Protein accession | YP_001898568 |
|---|
| Protein GI | 187928081 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3317] Uncharacterized lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.359862 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.208847 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGC ACCAAACCCG TCGCGGGGCT GTGGCGACGT CCGCTCAACT GTTGCTGGCC
GCGCTGTCGG TTGCCCTGAT TTCCGGTTGC GATACCGTCA ATGAGGTGAT GCAGCCGGAC
CGCATCGATT ACAAATCGCA GGCCAAGAAA GGCCCGACGC TTGAGGTCCC GCCCGACCTG
ACCGGCATCC AGGCTGACCG CCGCTATGCC GCACCGGACA CGGGCACGAC CACGCTGTCG
GCGTATACGT CAACGGCGCC CAAGGTCACG ACGCCCGGCT CGGGCACCGA GAATGTGCTG
CCTGCCGTGT CCGACATGCG TATCGAGCGT GATGGCAATC AGCGCTGGCT GCTCGTGAAG
ACCACGCCGG ATGCCTTGTG GCCGCAATTG CGCACGTTCT GGCAAGAACT GGGCTTCCTG
CTGGTGATCG ACTCGCCCGA GACCGGCATC ATGGAAACCG ACTGGGCTGA AAACCGCGCG
AAGATTCCGC AGGACATCAT CCGCCGCACC GTCGGCAAGG TATTCGATGG CTTGTACTCG
ACGTCTGAGC GTGACAAGTT CCGCACCCGC ATCGAGAAGG GTCCGAACGG CACGGTCGAA
GTCTACATCT CGCACCGCGG CGCGCAGGAA CAACTGGTCG GTTCGTCCAA GGACCAGACC
GTGTGGACGC CGCGTCCGGC CGATCCGGAA CTCGAAGCCG AATTCCTGTC GCGCCTGATG
CAGCGGCTGG GCGCCAGCAA GGAGGCCGCA CAGCAGAAGC TCGCGCAAAC GCAGGCAGCG
CACCCGGTGC AAGACGGCAC GAAGGCTGAA CCGGCCCCGC GTACCGGCCC ATCGTTGCTG
ACGCAGTCGA ATGGCCAACC GGTCCTGCAG GTGCCGGAGC CCTTTGATCG CGCATGGCGC
ACCGTGGGCT TGGCGCTGGA TCGCGTGAAC TTCACCGTGG ATGACCGCGA CCGCTCGCAA
GGGGTCTACT TCGTTCGCTA CGCTGATACG CGTGCCGAAG CCAACGCACC GGGCTTCTTC
TCGCGCCTGT TCTCGGGCAC GAAGATCGAA GACCTCAAGC GGGCCAAGCG TTACCGCGTG
GTCGTGAAGG ATGCTGGCAC GTCTTCGACG GTGCTGGTGC AAAACGACGA TGGCTCCGCG
CAGACCGGCG ACATCGGCAA GCGCATCCTG TCGCTGCTCG ACGAGCAACT GCGGTAA
|
|---|
| Protein sequence | MKLHQTRRGA VATSAQLLLA ALSVALISGC DTVNEVMQPD RIDYKSQAKK GPTLEVPPDL
TGIQADRRYA APDTGTTTLS AYTSTAPKVT TPGSGTENVL PAVSDMRIER DGNQRWLLVK
TTPDALWPQL RTFWQELGFL LVIDSPETGI METDWAENRA KIPQDIIRRT VGKVFDGLYS
TSERDKFRTR IEKGPNGTVE VYISHRGAQE QLVGSSKDQT VWTPRPADPE LEAEFLSRLM
QRLGASKEAA QQKLAQTQAA HPVQDGTKAE PAPRTGPSLL TQSNGQPVLQ VPEPFDRAWR
TVGLALDRVN FTVDDRDRSQ GVYFVRYADT RAEANAPGFF SRLFSGTKIE DLKRAKRYRV
VVKDAGTSST VLVQNDDGSA QTGDIGKRIL SLLDEQLR
|
|---|
| |