Gene Rpic_0949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0949 
Symbol 
ID6289451 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp1006406 
End bp1007641 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content62% 
IMG OID642624516 
Productporin Gram-negative type 
Protein accessionYP_001898531 
Protein GI187928044 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0379261 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGGTG TTCCCTTGGT GCAGGAGATT TCCGAGCTAA CAACGATGAA AACCACACGA 
GCCAAACGTT CTTTTTCGTT CCACCCGGTC TACGCATCAG CAGCGGTGCT GTGCGCCGGC
GTGTCGATGC ACGCATCGGC GCAAAGCTCC GTCACGCTGT ACGGCGTCGT CGATAACGCC
ATTGCCTATT CGAGCAACCA GGGCGGGCAT TCGAATACGT ATATGAATTC CGGTGCCCTG
GCCGCCAGCA AGTTCGGCCT GCTCGGCTCG GAAGACCTGG GAGGCGGCAC TACAGCAGTG
TTTCGTCTGG AGAACGGCTT CGCTGCCGAC ACGGGCGCGC AAAGCAAGGC GAACACCATC
TTTAACCGAC AGGCCTATGT CGGCCTGGCC AACAAGGACT ACGGCCAGCT CACGATGGGC
CGTCAGTACA CACCGTACTT CCAGTACGTT GCCGCGCTGG GCCCGACCAA TGTGCTGACG
GGCGCGGTCG GTGCGCACCC GGGCGATATC GACGCGATGG ACACCACGCT GCGTGTGCCG
AATTCGGTCA CCTATACGTC GCCCACGTTT GGCGGTCTCC AGGCGGGTCT GCAATATGGC
ATGGGCGAGC AGGCGGGCAG CATGTCCAAC GGCAGCGCCT TTAGCGCAGC GATGCGTTAT
GACTACCAGG CGTTTGCCTG GTCGGCTGGC TACGTTCGGT TGAAGAACGT CCCGACCTTC
CAGAACAACA CCGGCGACTT CGCCAACAAC GCGCCCATCA ACAAAGGCTA CGCAACGGCT
GATACCGCAC AGATCATCGG CACTGCTGCG CGCTACACCG TGGGCAAGCT GATGATGGGC
CTGAACTACT CCAACGTGCA GTACCGCCCG GGTGCCGGTT CGCCGGCGGG GTTTGCACAG
ACAGCGTCGT TCAACACGTT CGGTGCCATT GCCACATACG CGCTCACGCC TGCATTGACC
TTGACCGCCG GCTACAGCTA CACCGCCGAG AACAAGCGCA ATGGGGTCGA CAATGCGGCG
CGCTATCACC AGATCTCGAT GGAACAGCTG TACTCGTTCT CCAAGCGCAC CGCGCTCTAC
TTCGTTGAGG CCTATCAGAA GGCGAGCGGG CAGACGCTGA GCTCGGCGGG TGGAGTCGTC
AACGCCGTGG CCTCGGTGGG CGACTCGCAG AACGGCACGC CGTCGAACGG ACGCAGCCAG
TTTGTGGGCA TGGTCGGCAT TCGGCATTCG TTCTGA
 
Protein sequence
MRGVPLVQEI SELTTMKTTR AKRSFSFHPV YASAAVLCAG VSMHASAQSS VTLYGVVDNA 
IAYSSNQGGH SNTYMNSGAL AASKFGLLGS EDLGGGTTAV FRLENGFAAD TGAQSKANTI
FNRQAYVGLA NKDYGQLTMG RQYTPYFQYV AALGPTNVLT GAVGAHPGDI DAMDTTLRVP
NSVTYTSPTF GGLQAGLQYG MGEQAGSMSN GSAFSAAMRY DYQAFAWSAG YVRLKNVPTF
QNNTGDFANN APINKGYATA DTAQIIGTAA RYTVGKLMMG LNYSNVQYRP GAGSPAGFAQ
TASFNTFGAI ATYALTPALT LTAGYSYTAE NKRNGVDNAA RYHQISMEQL YSFSKRTALY
FVEAYQKASG QTLSSAGGVV NAVASVGDSQ NGTPSNGRSQ FVGMVGIRHS F