Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0949 |
Symbol | |
ID | 6289451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 1006406 |
End bp | 1007641 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642624516 |
Product | porin Gram-negative type |
Protein accession | YP_001898531 |
Protein GI | 187928044 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0379261 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCGGTG TTCCCTTGGT GCAGGAGATT TCCGAGCTAA CAACGATGAA AACCACACGA GCCAAACGTT CTTTTTCGTT CCACCCGGTC TACGCATCAG CAGCGGTGCT GTGCGCCGGC GTGTCGATGC ACGCATCGGC GCAAAGCTCC GTCACGCTGT ACGGCGTCGT CGATAACGCC ATTGCCTATT CGAGCAACCA GGGCGGGCAT TCGAATACGT ATATGAATTC CGGTGCCCTG GCCGCCAGCA AGTTCGGCCT GCTCGGCTCG GAAGACCTGG GAGGCGGCAC TACAGCAGTG TTTCGTCTGG AGAACGGCTT CGCTGCCGAC ACGGGCGCGC AAAGCAAGGC GAACACCATC TTTAACCGAC AGGCCTATGT CGGCCTGGCC AACAAGGACT ACGGCCAGCT CACGATGGGC CGTCAGTACA CACCGTACTT CCAGTACGTT GCCGCGCTGG GCCCGACCAA TGTGCTGACG GGCGCGGTCG GTGCGCACCC GGGCGATATC GACGCGATGG ACACCACGCT GCGTGTGCCG AATTCGGTCA CCTATACGTC GCCCACGTTT GGCGGTCTCC AGGCGGGTCT GCAATATGGC ATGGGCGAGC AGGCGGGCAG CATGTCCAAC GGCAGCGCCT TTAGCGCAGC GATGCGTTAT GACTACCAGG CGTTTGCCTG GTCGGCTGGC TACGTTCGGT TGAAGAACGT CCCGACCTTC CAGAACAACA CCGGCGACTT CGCCAACAAC GCGCCCATCA ACAAAGGCTA CGCAACGGCT GATACCGCAC AGATCATCGG CACTGCTGCG CGCTACACCG TGGGCAAGCT GATGATGGGC CTGAACTACT CCAACGTGCA GTACCGCCCG GGTGCCGGTT CGCCGGCGGG GTTTGCACAG ACAGCGTCGT TCAACACGTT CGGTGCCATT GCCACATACG CGCTCACGCC TGCATTGACC TTGACCGCCG GCTACAGCTA CACCGCCGAG AACAAGCGCA ATGGGGTCGA CAATGCGGCG CGCTATCACC AGATCTCGAT GGAACAGCTG TACTCGTTCT CCAAGCGCAC CGCGCTCTAC TTCGTTGAGG CCTATCAGAA GGCGAGCGGG CAGACGCTGA GCTCGGCGGG TGGAGTCGTC AACGCCGTGG CCTCGGTGGG CGACTCGCAG AACGGCACGC CGTCGAACGG ACGCAGCCAG TTTGTGGGCA TGGTCGGCAT TCGGCATTCG TTCTGA
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Protein sequence | MRGVPLVQEI SELTTMKTTR AKRSFSFHPV YASAAVLCAG VSMHASAQSS VTLYGVVDNA IAYSSNQGGH SNTYMNSGAL AASKFGLLGS EDLGGGTTAV FRLENGFAAD TGAQSKANTI FNRQAYVGLA NKDYGQLTMG RQYTPYFQYV AALGPTNVLT GAVGAHPGDI DAMDTTLRVP NSVTYTSPTF GGLQAGLQYG MGEQAGSMSN GSAFSAAMRY DYQAFAWSAG YVRLKNVPTF QNNTGDFANN APINKGYATA DTAQIIGTAA RYTVGKLMMG LNYSNVQYRP GAGSPAGFAQ TASFNTFGAI ATYALTPALT LTAGYSYTAE NKRNGVDNAA RYHQISMEQL YSFSKRTALY FVEAYQKASG QTLSSAGGVV NAVASVGDSQ NGTPSNGRSQ FVGMVGIRHS F
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