| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0946 |
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| Symbol | |
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| ID | 6289448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 1001178 |
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| End bp | 1002548 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642624513 |
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| Product | glucarate dehydratase |
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| Protein accession | YP_001898528 |
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| Protein GI | 187928041 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.189357 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0818467 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATACG TGATGACCAT GGATCACAAA ACCACCGACT CCCCACTTCG CACGCCGCGC
GTTACCCGCC TTCAAGTCAT TCCCGTGGCG GGCCGCGACA GTATGTTGTT GAATCTGAGC
GGCGCGCACG GCCCGTTCTT CACCCGCAAT ATCGTCCTCC TGGAGGACTC CGAGGGTCAT
ACCGGGGTGG GCGAGGTGCC GGGCGGCGAG TCCATCCGCA AGACCATCGA GGACGCGACG
CCGCTGGTTG TCGGACAACC GATCGGCGCG TACAACAACG TATTGAACAG CGTACGTCGC
CAATTTGCCG ATCGCGACGT CGCCGGCCGG GGGTTGCAGA CCTTCGACCT GCGCACCACC
GTGCATGCGG TGACGGCGCT GGAAAGCGCG CTGCTCGACT TGCTCGGCCA GCATCTGGGC
GTGCCTGTGG CGGCGCTGCT GGGGCAGGGG CAACAGCGCG ACAAGGTGCC GGTGCTCGGC
TACCTGTTCT TCGTGGGCGA CCGCAAACGC ACCGACCTGG ACTACGCCGA CGGCAGCGAT
GCCACGGACG ACTGGACCCG CGTGCGCCAC GAAGAAGCGC TTACGCCGGA GGCGGTCGTG
CGCCTCGCAA AGGCCGCCCA TGCGCGCTAT GGCTTCAAGG ATTTCAAGCT CAAGGGCGGT
GTGCTGAGCG GCGATGACGA AATGGTCGTC ACGACTGCAT TGGCCGAGGC CTTTCCCGAG
GCGCGCGTCA CGCTGGACCC GAACGGCGCG TGGTCGCTGG CCGAGGCCAT TCGCCTGTGC
CGCGACAAGC ACGACGTGCT GGCCTACGCC GAAGACCCGT GCGGCGCCGA GGGCGGTTAC
TCGGGCCGCG AAGTGATGGC GGAATTCCGC CGCGCCACGG GCCTGCCGAC GGCCACCAAC
ATGATCGCCA CCGACTGGCG CCAGATGGGG CACGCCATTC AGTTGCACTC CGTCGACATT
CCGCTGGCCG ATCCGCATTT CTGGACGATG CAGGGCTCGG TGCGCGTGGC GCAGATGTGC
GACGACTGGG GCCTGACCTG GGGTTCGCAC TCCAACAATC ACTTCGACAT TTCATTGGCG
ATGTTTACGC ACGTGGCCGC GGCTGCGCCG GGCAACATCA CCGCCATCGA CACGCACTGG
ATCTGGCAAG ACGGACAGCG CCTGACGCGT GAACCGTTCC AGATCGTCGG CGGTGAGATT
GCCGTTCCGG CCGCCCCGGG CCTGGGCGTC ACGGTCGACA TGGAGCAACT GGAGAAGGCC
CACGCCCTCT ACAAGCAGCA CGGCCTGGGC GCGCGCGACG ACGCAATCGC CATGCGCCAA
TTGATTCCCA ACTGGCAGTT CGACAACAAG CGCCCCTGCA TGGTGCGTTG A
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| Protein sequence | MTYVMTMDHK TTDSPLRTPR VTRLQVIPVA GRDSMLLNLS GAHGPFFTRN IVLLEDSEGH
TGVGEVPGGE SIRKTIEDAT PLVVGQPIGA YNNVLNSVRR QFADRDVAGR GLQTFDLRTT
VHAVTALESA LLDLLGQHLG VPVAALLGQG QQRDKVPVLG YLFFVGDRKR TDLDYADGSD
ATDDWTRVRH EEALTPEAVV RLAKAAHARY GFKDFKLKGG VLSGDDEMVV TTALAEAFPE
ARVTLDPNGA WSLAEAIRLC RDKHDVLAYA EDPCGAEGGY SGREVMAEFR RATGLPTATN
MIATDWRQMG HAIQLHSVDI PLADPHFWTM QGSVRVAQMC DDWGLTWGSH SNNHFDISLA
MFTHVAAAAP GNITAIDTHW IWQDGQRLTR EPFQIVGGEI AVPAAPGLGV TVDMEQLEKA
HALYKQHGLG ARDDAIAMRQ LIPNWQFDNK RPCMVR
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