| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0940 |
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| Symbol | |
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| ID | 6288395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 994627 |
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| End bp | 996306 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642624507 |
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| Product | Peptidoglycan-binding LysM |
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| Protein accession | YP_001898522 |
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| Protein GI | 187928035 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4254] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.147374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAAGC AAGCTGACGC AATCTGGGGT GGTTTGATTG GGCGCGCCGC GTTTGTCGGC
GCGTTCGTTC TTTTTGGCGG CGTGTGGCAG GCGGCGATGG CTCAGCCTTC CGGCGCTGAC
GGTGGCGATT TCATCTATCG CGTGCAGCAG GGCGACACGC TGATCAACCT CGCTGAACGT
TACATGGACA GCGTCGAAGG CTGGCGCCTG CTGCAGCGGC GCAACCATGT GGCCGATCCG
TATCGGTTGA AGCCCGGCTC GCTCCTCCGG ATTTCGTTCG ATCGCATTCC AGTGGTGCCC
TCGACGGCGC AGGTGGTGTT TGCACGCGAT GCAACCACCG GCGGCAAGCC GCTGCAAGCG
GGCATGAAGC TCGCTGAAGA GTCGCAGATC GACACCGGCG ACAAAGGTGG AGTCACGCTG
GCTTTTGATG ACGGCACACG CGTGACGGTG CCGCCGGGCA GCCACGTGGC GCTCTCGCGT
GTGCGGGCGT TTGCGCGTGC CGGGCTGATC GATGTACGCG TGCACGTGAA GAAAGGCGAA
GCGGAATCCA ACGTCTCGCC CAAGAAGAGC GGCGTGGGCC GTTACGAGAT TTCCACGCCT
GCGCTGGTGA CGGGCGTGCG AGGTACGCGT TTCCGCGTGC GGGCCAGCGA AGCGGGTTCG
ACGAGTTCCG TGCTGGAAGG TGAGGTTGCC ACAAGCGCCG GTCGTCAGAG GCAAGCGGTC
AAGGCTGGCT TTGGCGTGGT GGCATCGGCG GGACACCTCA AGCGGGCTGC GTTGCCGGCG
GCGCCCAAAC TCGACGTCAT TCCGCAACTT GTGCAGACGC CGTGCCTGCG CGCGACGTGG
CAGCCGGTCA GGGGCGCGGT CGGCTATCGC GCTGCAGTGG CGCGGGATGC CGCGCTGACC
GAACTCAGCG CCTATCAATT GAGCAAGACG CCCGCGGTAA CGCTCTGCGG CGATGAGGAC
GGCGACTACA CGCTCGTCGT GCAAAGCATC GACGCACTCG GACTGACTAG CGAATCGGCC
ACGCGGCCGT TCACCGTGCG CCTGCACCCG GAAGCGCCTT ATACGATCCA GCCCGCCAGC
GGCCGGACCT ACCGCAGCGG GGACGTGGCA TTTGCATGGG CTGTCGTGTC CGATGCTGGT
AGCTATGACA TGGAAGTGGC GGGCACCGAG AGCTTTGCCT CGCCGGCTGT TCAGCAGCAT
GGCGAGGACG TGCGTCTGAC CAGGCCGTTG ACGGCTGGCA CATGGTGGTG GCGTGTGCGC
TCGGTGGCAG CGGACGGCAA AACCGGCCCG TGGAGCGATG TGCTTCGTTT TCGCGTGCTC
GACATTCCGC CGGACGCCGT ACCGACAGCC GAAGTGGAAG CGAGCGATGA CGGCAAGCTG
CATGCCCACT GGTCGGCGTT GTCGCCCGAA CTGGCGGCAT CTGGCGCGCG CACGCGTGTG
CAACTGGCGG CCGACACAAG CTTCGCCAAA CCCATCGCCG ACATCGTGAG CGAAGGCAAC
GAGGCCACCA TTCCGCGGCC GCCGTCCGGC GTGTATTACA TCCGCACCGG CGTCGACTTG
GGCGATGCGG CATCGGTGGT CTACGCCAAG CCGCAGCGCA TTGACGTCGG TGCCTTCGTC
GGCGATTCCG CGCGCAGCCC GGTGCAGAGC GGCGGCGGCA ATCTCCTCCT CAATGACTGA
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| Protein sequence | MVKQADAIWG GLIGRAAFVG AFVLFGGVWQ AAMAQPSGAD GGDFIYRVQQ GDTLINLAER
YMDSVEGWRL LQRRNHVADP YRLKPGSLLR ISFDRIPVVP STAQVVFARD ATTGGKPLQA
GMKLAEESQI DTGDKGGVTL AFDDGTRVTV PPGSHVALSR VRAFARAGLI DVRVHVKKGE
AESNVSPKKS GVGRYEISTP ALVTGVRGTR FRVRASEAGS TSSVLEGEVA TSAGRQRQAV
KAGFGVVASA GHLKRAALPA APKLDVIPQL VQTPCLRATW QPVRGAVGYR AAVARDAALT
ELSAYQLSKT PAVTLCGDED GDYTLVVQSI DALGLTSESA TRPFTVRLHP EAPYTIQPAS
GRTYRSGDVA FAWAVVSDAG SYDMEVAGTE SFASPAVQQH GEDVRLTRPL TAGTWWWRVR
SVAADGKTGP WSDVLRFRVL DIPPDAVPTA EVEASDDGKL HAHWSALSPE LAASGARTRV
QLAADTSFAK PIADIVSEGN EATIPRPPSG VYYIRTGVDL GDAASVVYAK PQRIDVGAFV
GDSARSPVQS GGGNLLLND
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