Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0906 |
Symbol | |
ID | 6286241 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 962408 |
End bp | 963442 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642624470 |
Product | pseudouridine synthase, RluA family |
Protein accession | YP_001898488 |
Protein GI | 187928001 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.447686 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0333397 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGAGT TACGCCATCC ATTTGATGGC CGCATTCAAC AGGCCGGACG TGGCACACTC GGCGATGCGC TCGACGGCAA GTCAGTCGCC TATGTTGAAA TCGGTGAAGA CGCCGAAGGG CAGCGCATCG ACAATTTCCT GATGCGCGTG GCCAAGGGCG TGCCCAAGAG CCATATCTAC CGCATCCTGC GTTCCGGCGA GGTGCGAGTC AACAAAGGCC GCATCGACGC GGAATACCGT CTGAAACTCG GCGATCTGGT TCGTATTCCG CCGCTGCGGA TTGCCCAGCA GGTGGAAGCG GCCCGCCCTG TGCCGGCGGC AGAATTCACG ATCCTTCACG AAGATACGCA TCTTTTGGTG ATCGATAAGC CCGCCGGGGT GGCCGTGCAC GGCGGCTCCG GGGTGGCCTT CGGGGTGATT GAACAATTGC GTCAGTCGCG CCCCGACGCC AAGTTCCTGG AACTGGTGCA CCGCCTCGAC CGCGAAACGT CGGGCGTGCT GCTGCTTGCA AAAAAACGCT CTGCGCTGGT GGCGCTGCAT GAGCAGATCC GCGAAGGCCA GTTGGACAAG CGGTACTTTG CGGCGGTGAA GGGCGTCTGG CCGCACAAGC GACAACACAT CAAGTCGCCA CTGCACAAAT ACACCACGCC GGAAGGCGAG CGCCGCGTGC GCGTGCAGGC CGATGGGCAG GCGTCGCACA CGATCTTCAA CAAGGTCGGC GTGTTTGGCC CATACACGTT GCTGGAGGCC GAACTGAAGA CCGGGCGCAC GCACCAGATC CGGGTGCATT TGGCCCACGC GGGTTTTCCA ATCCTGGGCG ACGACAAGTA CGGCGACTTC GCCCTGAACA AGGCGCTATC CCGCGCGAAT GCTTCGCCGC GACTGGCGCG GATGTTCTTG CATGCGCATC GCCTACAACT GACGCATCCG CATAGCGGTG AAGTCGTCAC GTTCAATGCG CCGTTGCCCG CCGAGTGTAC CGATTTCCTC AACGCTTTCC AGGGCCCCGA TTCCGATGCC GCAGCAGCGC TTTGA
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Protein sequence | MNELRHPFDG RIQQAGRGTL GDALDGKSVA YVEIGEDAEG QRIDNFLMRV AKGVPKSHIY RILRSGEVRV NKGRIDAEYR LKLGDLVRIP PLRIAQQVEA ARPVPAAEFT ILHEDTHLLV IDKPAGVAVH GGSGVAFGVI EQLRQSRPDA KFLELVHRLD RETSGVLLLA KKRSALVALH EQIREGQLDK RYFAAVKGVW PHKRQHIKSP LHKYTTPEGE RRVRVQADGQ ASHTIFNKVG VFGPYTLLEA ELKTGRTHQI RVHLAHAGFP ILGDDKYGDF ALNKALSRAN ASPRLARMFL HAHRLQLTHP HSGEVVTFNA PLPAECTDFL NAFQGPDSDA AAAL
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