Gene Rpic_0830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0830 
Symbol 
ID6289027 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp876143 
End bp877033 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content66% 
IMG OID642624394 
ProductLytic transglycosylase catalytic 
Protein accessionYP_001898412 
Protein GI187927925 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0921738 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTTT TCGTACGTTT CGCATTCGCA TTGACGGCGC TGGCCTTGTT GGCCAGCCAG 
CCGGCGCGCG CGGACGTCTA CGGCTACATC GATGAAAACG GTCTGGCGCA CTTCGCTGCC
GAGCGGATAG ACGATCGCTA CGTGCTGTTC ATGAAGGGCG TGGCGGTGGC GGGCAAGGGC
GACGACAAGG CCAAGGACGA TAGCGCCATC GCCCTGCCGG CAACCGAGCT GCCCGACGCC
GACGCCTATC TCAACGCCAG CAAGCGCGAT GCACTCGACA ACGCTGCCGG CATGCGCCAG
CGCCTGGTGC GCGCGGTGTT GCAGCATCCG AACGTGCCGA CGGTGGAACC GCTGATCCGC
CAGGCCGCGA GCAAGCACGG TATCGACCCC GCGTTGGTGA AAGCCGTTAT TGCCGCCGAA
TCCGGTTTCA ACCCGCAGGC CGTGTCGCCC AAGGGTGCAA TCGGGCTGAT GCAGGTGATT
CCGGACACCG GCGCGCGCTA CGGCGTGACC GGCGACGCCC GCCGCACGGC CGCCCAGAAG
CTGGCCGACC CGAAGACCAA CATCACCACC GGCGTGCGTT ACCTGAGCGA TCTGCTGCGC
ATGTTCTCAG GCAACCTTGA GCTTGTGCTG GCCGCCTACA ACGCGGGCGA GGGCGCCGTG
CAGAAGCACG GCAACGACAT TCCGCCCTAC GCCGAGACGC AGAACTACGT GAAGACGGTG
CTGCAGTTCT ATCGCTACTA CAACCCGGTC GCCGCCGTGC CCGGATTCAT GAATGTGAGC
GCCAACGGCG TCATCGCCAC GCGCAAGCCG GGCCGCACGG GCCGGCCCGC ACGCATCGAA
CTCGTATTGG ACCCGGCCAC CGGCGTGGCC ACGAACGTAC CTCAACATTG A
 
Protein sequence
MKLFVRFAFA LTALALLASQ PARADVYGYI DENGLAHFAA ERIDDRYVLF MKGVAVAGKG 
DDKAKDDSAI ALPATELPDA DAYLNASKRD ALDNAAGMRQ RLVRAVLQHP NVPTVEPLIR
QAASKHGIDP ALVKAVIAAE SGFNPQAVSP KGAIGLMQVI PDTGARYGVT GDARRTAAQK
LADPKTNITT GVRYLSDLLR MFSGNLELVL AAYNAGEGAV QKHGNDIPPY AETQNYVKTV
LQFYRYYNPV AAVPGFMNVS ANGVIATRKP GRTGRPARIE LVLDPATGVA TNVPQH