Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0645 |
Symbol | |
ID | 6287420 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 685099 |
End bp | 686565 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642624206 |
Product | type I secretion outer membrane protein, TolC family |
Protein accession | YP_001898228 |
Protein GI | 187927741 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.173394 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTTG CTCGCAGTAG CCGCACGCGG ATAGCCGCGC GCGGTTCGCT TGTTGTGCTG TGCTGTTCGA TGATGCCGAT GTTCGCGTGG GCGCAGACCC AACCGAACAC GGCCGCTGCA ACCGACCTCC TCTCCGCCTA CCGCGCCGCG CTGGCCAACG ATCCGCAATT CGCATCGGCG CGCGCGCAGT CGCTGGCGCA ACGCGAGAAG CTCACGCAAG GCCGCGCTGG TTTGCTACCG CAGATCGGCG GCGCCTGGAG CTCCACGCGC ATCATCTTCG ATCAAACCGC TCCGGCCGAA TTCAACAAGA CGTTCTCTTC GACGGGCTGG ACGCTGTCAC TGTCGCAGCC GCTCTTCCGC TGGGACCGCT GGGAAACCTA CAAGCAAGGC GAGATTGCCG CGCAGGCCGC CGAGGCTTCG CTCGCGCAGG CGCAGCTCGA CCTCATCACA CGCACGGCGC GGGCCTACTT TGACGTGCTC AACGCGCAGG ACACGCTGCA GCTCGCCACC GCGCAGCGCG ATGCGATCCA GCAGCAGTAC GAACAGGCTC GCCGCAACTT CGACGTCGGC AACGCCAACA TCACCGACGC GAACGACGCA CAGGCCCGCC GCGACGCGAT CGACGCCAGC GTCATCGCAG CACGCAGCGA CTTTGAGATC AAGCAATCGG CGCTCAAGCA GATCATCGGG GAGCCCGTTG GCACGCTGGC CGGCGTGCGC ACGGGCGTCA CGATCCCCCA GCCGGAACCG GCTTCAGCAG AACCCTGGGT GGAACAGGCG CGCAGCAGCA ACCTGCAGGT GGCACTGGCG CAATACAACC TGCAAAGTGC AGAGCGCGAT CTGAAGAAGG CCACCGCGGG CCATCTGCCT TCGGTCGACC TCGTGGCGCA GACCGGCCAC ACCAATGCCA GCGGCAACCA ATACCTGCCG TCGCTGCCCG GCGGCGCGCG CTTCGACAGT TCACAGATTG GCGTGCAGGT GTCGATCCCG ATCTTTGCAG GCGGTGCGAT CCAGTCGCGC GTGCGTGAAA ACATCGCGCT GGAAACCAAG GCCGCAAACG ATCTTGAATT TGCCCGGCGC TCTGCCGAAC AAGGCGCACG GCAAGCCTAT ATCGGCGTGA TTGCCGGATT GGCGCAGGTC AAGGCACTGG AAGCGGCCGA GCTGTCGGCA CGTACAGCGT ACGACTCCAA CCAGCTCGCC TACGGTGTGG GCGTGCGCAT CGGCACCGAC GTGCTGAATT CGCAGGCGCA GCTGTTTCAG GCGCGGCGCG ATCTGGCACG CGCGCGTTAT GACACCATCG TCAACGGGCT GCGGCTGAAG TCTGCAGCCG GCTCGTTGAC TGAGGGAGAC GTGATCCAGG TGAACACGCT GCTCACGGCC AACGGTTCGA GCGATATCAC TGCGTTGCCG CCGGCAAGCA CCAAACTTGA ATCGGCGAAA CCAACGGGCA AATCGGCCAA ACGCTGA
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Protein sequence | MTVARSSRTR IAARGSLVVL CCSMMPMFAW AQTQPNTAAA TDLLSAYRAA LANDPQFASA RAQSLAQREK LTQGRAGLLP QIGGAWSSTR IIFDQTAPAE FNKTFSSTGW TLSLSQPLFR WDRWETYKQG EIAAQAAEAS LAQAQLDLIT RTARAYFDVL NAQDTLQLAT AQRDAIQQQY EQARRNFDVG NANITDANDA QARRDAIDAS VIAARSDFEI KQSALKQIIG EPVGTLAGVR TGVTIPQPEP ASAEPWVEQA RSSNLQVALA QYNLQSAERD LKKATAGHLP SVDLVAQTGH TNASGNQYLP SLPGGARFDS SQIGVQVSIP IFAGGAIQSR VRENIALETK AANDLEFARR SAEQGARQAY IGVIAGLAQV KALEAAELSA RTAYDSNQLA YGVGVRIGTD VLNSQAQLFQ ARRDLARARY DTIVNGLRLK SAAGSLTEGD VIQVNTLLTA NGSSDITALP PASTKLESAK PTGKSAKR
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