Gene Rpic_0645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0645 
Symbol 
ID6287420 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp685099 
End bp686565 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content65% 
IMG OID642624206 
Producttype I secretion outer membrane protein, TolC family 
Protein accessionYP_001898228 
Protein GI187927741 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.173394 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGTTG CTCGCAGTAG CCGCACGCGG ATAGCCGCGC GCGGTTCGCT TGTTGTGCTG 
TGCTGTTCGA TGATGCCGAT GTTCGCGTGG GCGCAGACCC AACCGAACAC GGCCGCTGCA
ACCGACCTCC TCTCCGCCTA CCGCGCCGCG CTGGCCAACG ATCCGCAATT CGCATCGGCG
CGCGCGCAGT CGCTGGCGCA ACGCGAGAAG CTCACGCAAG GCCGCGCTGG TTTGCTACCG
CAGATCGGCG GCGCCTGGAG CTCCACGCGC ATCATCTTCG ATCAAACCGC TCCGGCCGAA
TTCAACAAGA CGTTCTCTTC GACGGGCTGG ACGCTGTCAC TGTCGCAGCC GCTCTTCCGC
TGGGACCGCT GGGAAACCTA CAAGCAAGGC GAGATTGCCG CGCAGGCCGC CGAGGCTTCG
CTCGCGCAGG CGCAGCTCGA CCTCATCACA CGCACGGCGC GGGCCTACTT TGACGTGCTC
AACGCGCAGG ACACGCTGCA GCTCGCCACC GCGCAGCGCG ATGCGATCCA GCAGCAGTAC
GAACAGGCTC GCCGCAACTT CGACGTCGGC AACGCCAACA TCACCGACGC GAACGACGCA
CAGGCCCGCC GCGACGCGAT CGACGCCAGC GTCATCGCAG CACGCAGCGA CTTTGAGATC
AAGCAATCGG CGCTCAAGCA GATCATCGGG GAGCCCGTTG GCACGCTGGC CGGCGTGCGC
ACGGGCGTCA CGATCCCCCA GCCGGAACCG GCTTCAGCAG AACCCTGGGT GGAACAGGCG
CGCAGCAGCA ACCTGCAGGT GGCACTGGCG CAATACAACC TGCAAAGTGC AGAGCGCGAT
CTGAAGAAGG CCACCGCGGG CCATCTGCCT TCGGTCGACC TCGTGGCGCA GACCGGCCAC
ACCAATGCCA GCGGCAACCA ATACCTGCCG TCGCTGCCCG GCGGCGCGCG CTTCGACAGT
TCACAGATTG GCGTGCAGGT GTCGATCCCG ATCTTTGCAG GCGGTGCGAT CCAGTCGCGC
GTGCGTGAAA ACATCGCGCT GGAAACCAAG GCCGCAAACG ATCTTGAATT TGCCCGGCGC
TCTGCCGAAC AAGGCGCACG GCAAGCCTAT ATCGGCGTGA TTGCCGGATT GGCGCAGGTC
AAGGCACTGG AAGCGGCCGA GCTGTCGGCA CGTACAGCGT ACGACTCCAA CCAGCTCGCC
TACGGTGTGG GCGTGCGCAT CGGCACCGAC GTGCTGAATT CGCAGGCGCA GCTGTTTCAG
GCGCGGCGCG ATCTGGCACG CGCGCGTTAT GACACCATCG TCAACGGGCT GCGGCTGAAG
TCTGCAGCCG GCTCGTTGAC TGAGGGAGAC GTGATCCAGG TGAACACGCT GCTCACGGCC
AACGGTTCGA GCGATATCAC TGCGTTGCCG CCGGCAAGCA CCAAACTTGA ATCGGCGAAA
CCAACGGGCA AATCGGCCAA ACGCTGA
 
Protein sequence
MTVARSSRTR IAARGSLVVL CCSMMPMFAW AQTQPNTAAA TDLLSAYRAA LANDPQFASA 
RAQSLAQREK LTQGRAGLLP QIGGAWSSTR IIFDQTAPAE FNKTFSSTGW TLSLSQPLFR
WDRWETYKQG EIAAQAAEAS LAQAQLDLIT RTARAYFDVL NAQDTLQLAT AQRDAIQQQY
EQARRNFDVG NANITDANDA QARRDAIDAS VIAARSDFEI KQSALKQIIG EPVGTLAGVR
TGVTIPQPEP ASAEPWVEQA RSSNLQVALA QYNLQSAERD LKKATAGHLP SVDLVAQTGH
TNASGNQYLP SLPGGARFDS SQIGVQVSIP IFAGGAIQSR VRENIALETK AANDLEFARR
SAEQGARQAY IGVIAGLAQV KALEAAELSA RTAYDSNQLA YGVGVRIGTD VLNSQAQLFQ
ARRDLARARY DTIVNGLRLK SAAGSLTEGD VIQVNTLLTA NGSSDITALP PASTKLESAK
PTGKSAKR