| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0591 |
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| Symbol | |
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| ID | 6288423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 625410 |
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| End bp | 627401 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642624152 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001898174 |
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| Protein GI | 187927687 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.341845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0532026 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACGA ACCAAAAAAC CAATGGCGCC AACGTCACGC TACGTGGCGT ACAGGTCCTC
GGCAGCACAC GCATGCTCAT TCTGGCGAGT GCCGCCGGTG CCATGCTCTG CATGCCTACG
CATGCGACAG CACAAGCGGC CATGGAGGCA GGCGCCGTAG CCAAGTCCAC CACAGCACCG
GTCGTGATGC AGTCTCGCGC CGGTGCATCC GCACCGGTGC AGATGACGAT CAGCATGAAC
CCGGCGCTGG CGACCGCACC GGTGGCCGAT GTACGCGGGC CGAACTGCAC GGGCGCCGTG
CGCGGCGAAA GCAGCGTGGT GGTGCCGGTT GGCAAGTCTT CGCTCATCTC GCTGCCGGAG
CCCGTGCGCA ATCGCACGCT GGGCAATCCG GCTGTGGTGC AGGCCACCAT GGTGTCGCCG
CAATCCATGT ATCTGCTGGG CCGCAGTGTG GGCACCACCA ACATGATCGT GCAGGGGCGC
AGCGGCGCCT GCAGCATCGT CAATGTGGTA GTTAACGCCG ATGCCGGTGG CCTGCAGACT
TCGCTCGCGC AGCTGATGCC GGGTGAAAAC AAGATTCGCG TGATGACCGC GGCAGACAGC
CTTGTACTGG CCGGCAACGT GTCGAGCGCA CAGGCGGCGC AGCAAGCCAT GGAAATCGCC
CACGCCTATG CAGCTTCTGC ACAAAGCGGT GCGGACAAGG GCGGCGGTGC GGCAGGTGCA
CTCGGCGGTG GTGGTGCCGC CGGCGGTGCC AACGTCATCA ACATGATGAT CGTGGATACA
CCGCAGCAGG TCATGCTGGA AGTCAAGGTG GCGGAAGTGT CGAAGACCCT ATTGAACCAG
CTGGGCTCGG CACTCAATGT CCAAGGCGGA TTCGGCTCGT GGAGCGGCGG CCTCCTGACC
TCCCTGTTGA CCGGCTCGTC TACCGGGTTC TTTGCCAACA AGGCGAACAA CCGGCCCTTC
CAGGTTGAGT TGGATGCGCA AAAGAACGAC AGCCTGGTGA AGATCCTTGC CGAGCCGAAT
CTCGTCACGC TCAGTGGCCA GGAAGCCAGC TTCCTGGCAG GCGGCAAGAT CTACATCCCG
GTTGCGCAGA GCAGCAGCTC AGGTGGCGCT CCCACCATCA CGCTGCAAGA GGAGGAGTAT
GGCGTTGGCC TGAAGTTCAC GCCAACCGTA ATGGCCAATG GCCGCATCAA CCTCAAGGTG
GCACCGGAGG TATCGGAACT TTCGCCCACG GGCGCAACTG TCACCGGTGC CAACACGAAC
GGCCAGACCA TCCTGCCGCT CATCACCACG CGGCGCGCCT CCACCACCGT GCAGATGCGT
GACGGAGAGA GCTTTGCCAT CGGTGGGCTG CTGCAAGACA ACGCGCGCGG CTCACTGAAG
GCATTGCCCG GCGCGGGTGA AATCCCCGTC CTGGGCACCC TCTTCCGCAG CACGCAGTTC
CAGCATGACC TGACGGAGCT GGTCATCGTC ATCACGCCGC GCCTGGTGCA GCCAATGCAG
ACGGCCTCGT ATCCGCTGCC GACTGACAGC TTCTCGACGC CCAACGAGCT TGCCGTCTAC
CTGACGGGCA ACATGGAAGG CTCCGGCGCC AAGAACCGCG CGGCCAAACC AGCAACGGCC
GCCGCACCTG CAACGGCACC GCAGGTACCT GCGCAGGTAC CGAGCGCACC CGCTGCCCCC
AGCTCGCAGG CGCCGATGCC GGCTCCGGTT GCGCCCGCAC CGGTCGCTCC GGTCATCCCT
GCACCACGCA CTGAGGTGAG CATCGCCCCG CCCACGCAGC CGGCAAACGG TGCGCCCGAA
AAACCGGCGG CCGCGCAACC GGTTTGGGAA ACCGCGCCCG TTACAACATC GGCCACGGCG
CCCACGGACG ACAATGCCGC GCGTGTTGCC CGAATCGAAG CCACTGCGGC ACGGCTGGCC
CAGGCCAGAA CCAAGACGCA GGGCCGGCAG ACGGCAGTGG CCGACACGAC CACAACCCCG
CAGACACGCT AA
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| Protein sequence | MKTNQKTNGA NVTLRGVQVL GSTRMLILAS AAGAMLCMPT HATAQAAMEA GAVAKSTTAP
VVMQSRAGAS APVQMTISMN PALATAPVAD VRGPNCTGAV RGESSVVVPV GKSSLISLPE
PVRNRTLGNP AVVQATMVSP QSMYLLGRSV GTTNMIVQGR SGACSIVNVV VNADAGGLQT
SLAQLMPGEN KIRVMTAADS LVLAGNVSSA QAAQQAMEIA HAYAASAQSG ADKGGGAAGA
LGGGGAAGGA NVINMMIVDT PQQVMLEVKV AEVSKTLLNQ LGSALNVQGG FGSWSGGLLT
SLLTGSSTGF FANKANNRPF QVELDAQKND SLVKILAEPN LVTLSGQEAS FLAGGKIYIP
VAQSSSSGGA PTITLQEEEY GVGLKFTPTV MANGRINLKV APEVSELSPT GATVTGANTN
GQTILPLITT RRASTTVQMR DGESFAIGGL LQDNARGSLK ALPGAGEIPV LGTLFRSTQF
QHDLTELVIV ITPRLVQPMQ TASYPLPTDS FSTPNELAVY LTGNMEGSGA KNRAAKPATA
AAPATAPQVP AQVPSAPAAP SSQAPMPAPV APAPVAPVIP APRTEVSIAP PTQPANGAPE
KPAAAQPVWE TAPVTTSATA PTDDNAARVA RIEATAARLA QARTKTQGRQ TAVADTTTTP
QTR
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