| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0538 |
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| Symbol | |
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| ID | 6288538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 574809 |
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| End bp | 576566 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642624103 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001898125 |
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| Protein GI | 187927638 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGGC GCTTTGGCGC CAGCGTCGCC ATCGTCCTCG TTCCGGTGTT GTCGTTATCG
TGCTGGCTGC TGGGCTACGC ATGGTTGGCC TACGGCCGTG CCGACGATTC CGCCCGCAGC
GTCCAGGTGC TGCGCATGAC GTTGCTGGCC ATGGAGAAGG TTTCAGCCGA ACGCGGCCCG
ACCAACGGCG TGCTCGGCGA AGACTTGCCG GTGCCGGCCG AGCGCAGCGC GGCCCTGCAA
CGCATGCGCG CCGTCAGCGA CGAACACGTC GCCCAATTGC TCGACGCGCT GGGCCCTGAA
CATTGCCCAG GCTGCGAGGC CGACATCAAG GCCGCGCGCC GCGCCCAGAC GCATCTGGCC
GCCGCGCGCG CCAACATCGA CCGGCTGACC GCCCTGCCCC TGCGCTCACG CAGCAGCGAC
GACCTGGCCG ATGGCGTGAA CCGCATGATC GCGGTCATCC CGGAATTCCT GCCCATCGTC
AACGCGCGCA CGGCCAACAT CACGCGCGGC GATCCCGACG TGCTCAATTG CCTGACGCTG
GCGCGGCTGT CGGCCGATCT ACGTGAATAC GCGGGCCAGC TCGGTTCGCG CTTTACCGGT
GCGCTGGCCA TGCACCGCAT GCTCACGTTT GACGAGCAGC TTGCAATCGA ACGCACGCAA
GGCCGTATTG ACCAGCTGCG CAGCATGATC GAGACCCGCG TGGGTGCGCA TTCGGCACTG
AACCAGCACG CCTTGGCCAC GCTCGGCGCC CAGTACTTCG GCGACGGGCT GCGCTATGTG
GCTGCCGTGC GCGCCAAGGC CAGCCAGCCC GGCGGCGTCG ATATCACCCC CGCCGCATTT
GCCGAGCGCT ACGTGCCCAC CATGCGCGCC ACTACGGATT TCCGCGACAT CGTGCTGCGC
CTGGCGGATG ACGACATCCG CCAACATCGG CGCGCGATGC TGCTGGTGCT CATCGGCTCG
GCAGGCGCCG TGGTGTCGGT GCTGGGCGCG CTGGCATGGA TGATGATTTC GTTCCGCCGC
AACGTGGTGA GGCCGTTTGT CAACGCCACG CGGCTGATCG ACGGGATTGC GCGAGGCAAC
TTGAGTGTGC ACATCCCGAC CGACTTTGCG CGGCGCGAGA TCCGAGCGAT GTTCGACGCG
ATCCGCGTGC TGCGCATCAA TAGCATCGAG CGCCGCCGGC TGGAGGTGGA ACGCGCGCAC
CTGATGCAGG AACTCTCGCG CATGGCCGAG ACCGACCCGC TCACCCAGTT GCTCAACCGT
CGCGCCTTTG AAGACCGCGC CGGCGCGATG TGCAAATCGC CGCAGCCGAA GGCGCGGCTC
ATTGCACTGA TCATGTTCGA CATCGACCAC TTCAAGCGCA TCAACGATAC GTACGGCCAC
GCCGTGGGCG ATGAAGCGCT GCGCACCGTT GCAAGACTGT GCCGCTCTGA AGGCCCGTCC
GCCGACATGG TGGCGCGCAT CGGCGGCGAG GAATTCGCAG TGATGGTGTG GGCGGACAGC
CTCGCGCAGG CGCGCGCGGT GGCCGATCAT CTGCGCCATC GCATTGCCGA GGTGACAGTG
CCCACCGGCA CCGATCTGCC CTGCAGCATG ACGGCCAGCT TTGGCGTGGC GGCAGCGCCC
GCGGCGGATG GCCCCGAACT GGAGCCGCTG CTGCGGCGGG CAGACCATCT GCTCTATGCT
GCCAAGCTGG CGGGGCGCAA CTGCGTGATG GCGGACCGCC CGCCTGCGTC GCCAGACGTG
GCGCTCGCGG CGGATTGA
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| Protein sequence | MDRRFGASVA IVLVPVLSLS CWLLGYAWLA YGRADDSARS VQVLRMTLLA MEKVSAERGP
TNGVLGEDLP VPAERSAALQ RMRAVSDEHV AQLLDALGPE HCPGCEADIK AARRAQTHLA
AARANIDRLT ALPLRSRSSD DLADGVNRMI AVIPEFLPIV NARTANITRG DPDVLNCLTL
ARLSADLREY AGQLGSRFTG ALAMHRMLTF DEQLAIERTQ GRIDQLRSMI ETRVGAHSAL
NQHALATLGA QYFGDGLRYV AAVRAKASQP GGVDITPAAF AERYVPTMRA TTDFRDIVLR
LADDDIRQHR RAMLLVLIGS AGAVVSVLGA LAWMMISFRR NVVRPFVNAT RLIDGIARGN
LSVHIPTDFA RREIRAMFDA IRVLRINSIE RRRLEVERAH LMQELSRMAE TDPLTQLLNR
RAFEDRAGAM CKSPQPKARL IALIMFDIDH FKRINDTYGH AVGDEALRTV ARLCRSEGPS
ADMVARIGGE EFAVMVWADS LAQARAVADH LRHRIAEVTV PTGTDLPCSM TASFGVAAAP
AADGPELEPL LRRADHLLYA AKLAGRNCVM ADRPPASPDV ALAAD
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