Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0501 |
Symbol | |
ID | 6288888 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 534186 |
End bp | 536777 |
Gene Length | 2592 bp |
Protein Length | 863 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642624066 |
Product | DNA ligase D |
Protein accession | YP_001898088 |
Protein GI | 187927601 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.535245 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.0602088 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCACGCC ATCTCGCCGA CTACCGCAGC AAGCGCGATT TCACGCAGAC CCAGGAACCC GCCGGCGCGC GCCGCAAAGC CGACGAGCAG CGTGACCATG GCGCCCTGCA CTTCGTGATC CAGAAGCACG ACGCAACGCG ACTGCACTAC GACTTCCGGC TGGAACTCGA CGGCACGCTC AAGAGCTGGG CCGTCCCCAA GGGCCCGAGC CTGGACCCCG CCGACAAGCG CCTCGCGGTA CATGTTGAAG ACCACCCGCT GGACTACGCG GATTTCGAAG GCCATATCCC CGAAGGACAA TACGGCGGCG GCGACGTGAT CGTGTGGGAC CGCGGGACAT GGCGCCCGCA TGGCGATCCG CGCAAGGCCT ATCGCGACGG CAAGCTCAAA TTCGACCTCC ATGGCGAGAA GCTGCATGGT GCATGGGCGC TGGTACGCAC GCATTTGCAC GGCACGGGCA GACATCCGAA AGAACAGTGG CTGCTGATCA AGGAACGCGA CGACCAGGTG CGCGCATCGA GCGACTACGA CGTGACACAG GCGCTGCCCG CCAGCGTGAT CACCGGAGAG AACGTCGGCG CAAAACCGAA GGCTAAGGCC GATGGCCGCA AGACCCAGCG TGCCGATCCG GCACAAGTCC AGCCGCCCGC CGGTGCCGTG CCCGGCACGT TGCCGAAAAC GCTGGAGCCG CAGCTTGCCA CGCTCGTCGA TGCGCCGCCA AGGCAAGGCG AGTGGAATTA CGAAGTGAAG TTCGACGGCT ACCGCATCCT GGCGCGCATC GACGGCAACA CCGTGCGCCT GTTCAGCCGC AACGGCCGCG ACTGGACGGC CAAGCTGCCG CGTCAGGCGC GCACGCTGCA GGCGCTGGGC CTGCGCGAGG CGTGGCTCGA CGGCGAAGTC GTGGTGATGG GCGAGCGCGG CGTGCCCGAC TTCCAGGCGC TGCAGAACGC CTTCGAAACC GCGCATGCCG AACACATTGC CTACTACCTG TTCGACATCC CGTTCTGCAA CGGCATGGAC TTGCGCGGTG TGCCGTTGCG CGAGCGGCGG GCGCTGCTTG AGCGCATTCT CGATGCCGCC CCGGGCAACC TGGACCGCGA AGCGGTGCTC TTCTCAGGGA CATTTCACGC GGCACCCGAA GACTTGCTGT CTTCCGCGTG CAGCATGTCG CTCGAAGGGG TGATCGGCAA GCGCGCCGAT GCGCCGTACC GGGCCGGCCG CAGCCCTGCC TGGATCAAGC TCAAATGCGG GCAGCGGCAG GAATTCGTGA TCGGCGGGTA CAGTGCGCCC AAGGGTAGCC GCAGCGGCTT CGGTGCCCTG CTGCTCGGCG TGTATGACGA CGCGGGCAAG CTGCGCTATG CGGGCCGTGT CGGCACGGGC TTCAACGAGA CGAGTCTGCA CGCTTTGCAC CACGAGCTGA CGGGTCTGAC CGTCGACACG CCGCCCTTCG CCAACCCGCC CACCGGCAGC GATGCGCGCG ACGTGCAATG GGTGAAGCCC GAACGCGTGG CGGAAATCGC CTTTGCCGAA TGGACGCGCG AAGGCATCGT GCGGCAAGCC GTGTTCCAAG GTTTGCGTGA CGACAAACTC GCGCGCAACA TCGTGCGTGA ACAAGCCAAG CCGCCCAGCG CTGCCGCACG CAAGGAGACC CGCGCCGTGA ATGCTGCCGA ACGCAAGGTG CGCCCCGGTG CCGAACGCAT CGCCGATGTG GACGTCACGC ATCCAGATCG CGTGATCGAG AAAGCCAGTG GCACCACCAA GGCGGACCTG GCGCGCTATT ACGCCGGTGT GGCCGAATGG ATGCTGCCGC ATCTTCGCAA CCGCCCGACA TCGCTCGTAC GCGCGCCCGA CGGCATCGAC GGCGAGCGCT TCTTCCAGAA GCATTCCGCC GCGCTCAAGC TGCAGGGCAT CACGCAGCTG GACCCATCGC TCGACCCGGG GCATCCGTCG CTGCTTGCGA TCAACTCGGC CGAGGCCCTG GTCGGCGCGG TGCAGATGGG CACGGTGGAG TTCCACACGT GGAATGCGCT GGCCGACCGC ATCGAACAAC CCGACCGCAT CGTCTTCGAT ATCGACCCGG ACCCGGCGCT GCCTTTCGCG CGCGTGATCG AGGCCACGCA GCTCATGCTG GCCATGCTTG ATGAACTCGG CCTGAAGGCC TTCCTGAAAA CCAGCGGTGG GCATGGCATG CACGTGGTGG TGCTGCTCAC GCGCCGCGAA GCCGCTGGCT GGGACACGCT CAAAACGTTC GCGCAAGCCG TGGTGCAACA CATGGCCGCG ACCTTCCCTG ACCGCTTTGT CGCCAAGATG GGGCCGCAGA ACCGCGTGGG AAAAATCTTC ATCGACTATC TGCGCAACAA CCGCGGTGCG AGCACGGTGG CCGCCTATTC GGTGCGCGCG CGGACGGGGT TGCCAGTGTC CGTGCCGATC CGCCATGACG AGCTGGAAGG GCTGCAGTCG TCTGCCCAGT GGACGCTGCG CACGCTGCCC GAACGGCTCG CCAAGCTCAA GGGCGATCCT TGGGCCGCCT ATGCCGGTAC GCGTCAATCG GTCACGGCCG ACATGCGCAA ACGCGTTGGC GCCGATGACT GA
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Protein sequence | MPRHLADYRS KRDFTQTQEP AGARRKADEQ RDHGALHFVI QKHDATRLHY DFRLELDGTL KSWAVPKGPS LDPADKRLAV HVEDHPLDYA DFEGHIPEGQ YGGGDVIVWD RGTWRPHGDP RKAYRDGKLK FDLHGEKLHG AWALVRTHLH GTGRHPKEQW LLIKERDDQV RASSDYDVTQ ALPASVITGE NVGAKPKAKA DGRKTQRADP AQVQPPAGAV PGTLPKTLEP QLATLVDAPP RQGEWNYEVK FDGYRILARI DGNTVRLFSR NGRDWTAKLP RQARTLQALG LREAWLDGEV VVMGERGVPD FQALQNAFET AHAEHIAYYL FDIPFCNGMD LRGVPLRERR ALLERILDAA PGNLDREAVL FSGTFHAAPE DLLSSACSMS LEGVIGKRAD APYRAGRSPA WIKLKCGQRQ EFVIGGYSAP KGSRSGFGAL LLGVYDDAGK LRYAGRVGTG FNETSLHALH HELTGLTVDT PPFANPPTGS DARDVQWVKP ERVAEIAFAE WTREGIVRQA VFQGLRDDKL ARNIVREQAK PPSAAARKET RAVNAAERKV RPGAERIADV DVTHPDRVIE KASGTTKADL ARYYAGVAEW MLPHLRNRPT SLVRAPDGID GERFFQKHSA ALKLQGITQL DPSLDPGHPS LLAINSAEAL VGAVQMGTVE FHTWNALADR IEQPDRIVFD IDPDPALPFA RVIEATQLML AMLDELGLKA FLKTSGGHGM HVVVLLTRRE AAGWDTLKTF AQAVVQHMAA TFPDRFVAKM GPQNRVGKIF IDYLRNNRGA STVAAYSVRA RTGLPVSVPI RHDELEGLQS SAQWTLRTLP ERLAKLKGDP WAAYAGTRQS VTADMRKRVG ADD
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