Gene Rpic_0501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0501 
Symbol 
ID6288888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp534186 
End bp536777 
Gene Length2592 bp 
Protein Length863 aa 
Translation table11 
GC content66% 
IMG OID642624066 
ProductDNA ligase D 
Protein accessionYP_001898088 
Protein GI187927601 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase 
TIGRFAM ID[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.535245 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0602088 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCACGCC ATCTCGCCGA CTACCGCAGC AAGCGCGATT TCACGCAGAC CCAGGAACCC 
GCCGGCGCGC GCCGCAAAGC CGACGAGCAG CGTGACCATG GCGCCCTGCA CTTCGTGATC
CAGAAGCACG ACGCAACGCG ACTGCACTAC GACTTCCGGC TGGAACTCGA CGGCACGCTC
AAGAGCTGGG CCGTCCCCAA GGGCCCGAGC CTGGACCCCG CCGACAAGCG CCTCGCGGTA
CATGTTGAAG ACCACCCGCT GGACTACGCG GATTTCGAAG GCCATATCCC CGAAGGACAA
TACGGCGGCG GCGACGTGAT CGTGTGGGAC CGCGGGACAT GGCGCCCGCA TGGCGATCCG
CGCAAGGCCT ATCGCGACGG CAAGCTCAAA TTCGACCTCC ATGGCGAGAA GCTGCATGGT
GCATGGGCGC TGGTACGCAC GCATTTGCAC GGCACGGGCA GACATCCGAA AGAACAGTGG
CTGCTGATCA AGGAACGCGA CGACCAGGTG CGCGCATCGA GCGACTACGA CGTGACACAG
GCGCTGCCCG CCAGCGTGAT CACCGGAGAG AACGTCGGCG CAAAACCGAA GGCTAAGGCC
GATGGCCGCA AGACCCAGCG TGCCGATCCG GCACAAGTCC AGCCGCCCGC CGGTGCCGTG
CCCGGCACGT TGCCGAAAAC GCTGGAGCCG CAGCTTGCCA CGCTCGTCGA TGCGCCGCCA
AGGCAAGGCG AGTGGAATTA CGAAGTGAAG TTCGACGGCT ACCGCATCCT GGCGCGCATC
GACGGCAACA CCGTGCGCCT GTTCAGCCGC AACGGCCGCG ACTGGACGGC CAAGCTGCCG
CGTCAGGCGC GCACGCTGCA GGCGCTGGGC CTGCGCGAGG CGTGGCTCGA CGGCGAAGTC
GTGGTGATGG GCGAGCGCGG CGTGCCCGAC TTCCAGGCGC TGCAGAACGC CTTCGAAACC
GCGCATGCCG AACACATTGC CTACTACCTG TTCGACATCC CGTTCTGCAA CGGCATGGAC
TTGCGCGGTG TGCCGTTGCG CGAGCGGCGG GCGCTGCTTG AGCGCATTCT CGATGCCGCC
CCGGGCAACC TGGACCGCGA AGCGGTGCTC TTCTCAGGGA CATTTCACGC GGCACCCGAA
GACTTGCTGT CTTCCGCGTG CAGCATGTCG CTCGAAGGGG TGATCGGCAA GCGCGCCGAT
GCGCCGTACC GGGCCGGCCG CAGCCCTGCC TGGATCAAGC TCAAATGCGG GCAGCGGCAG
GAATTCGTGA TCGGCGGGTA CAGTGCGCCC AAGGGTAGCC GCAGCGGCTT CGGTGCCCTG
CTGCTCGGCG TGTATGACGA CGCGGGCAAG CTGCGCTATG CGGGCCGTGT CGGCACGGGC
TTCAACGAGA CGAGTCTGCA CGCTTTGCAC CACGAGCTGA CGGGTCTGAC CGTCGACACG
CCGCCCTTCG CCAACCCGCC CACCGGCAGC GATGCGCGCG ACGTGCAATG GGTGAAGCCC
GAACGCGTGG CGGAAATCGC CTTTGCCGAA TGGACGCGCG AAGGCATCGT GCGGCAAGCC
GTGTTCCAAG GTTTGCGTGA CGACAAACTC GCGCGCAACA TCGTGCGTGA ACAAGCCAAG
CCGCCCAGCG CTGCCGCACG CAAGGAGACC CGCGCCGTGA ATGCTGCCGA ACGCAAGGTG
CGCCCCGGTG CCGAACGCAT CGCCGATGTG GACGTCACGC ATCCAGATCG CGTGATCGAG
AAAGCCAGTG GCACCACCAA GGCGGACCTG GCGCGCTATT ACGCCGGTGT GGCCGAATGG
ATGCTGCCGC ATCTTCGCAA CCGCCCGACA TCGCTCGTAC GCGCGCCCGA CGGCATCGAC
GGCGAGCGCT TCTTCCAGAA GCATTCCGCC GCGCTCAAGC TGCAGGGCAT CACGCAGCTG
GACCCATCGC TCGACCCGGG GCATCCGTCG CTGCTTGCGA TCAACTCGGC CGAGGCCCTG
GTCGGCGCGG TGCAGATGGG CACGGTGGAG TTCCACACGT GGAATGCGCT GGCCGACCGC
ATCGAACAAC CCGACCGCAT CGTCTTCGAT ATCGACCCGG ACCCGGCGCT GCCTTTCGCG
CGCGTGATCG AGGCCACGCA GCTCATGCTG GCCATGCTTG ATGAACTCGG CCTGAAGGCC
TTCCTGAAAA CCAGCGGTGG GCATGGCATG CACGTGGTGG TGCTGCTCAC GCGCCGCGAA
GCCGCTGGCT GGGACACGCT CAAAACGTTC GCGCAAGCCG TGGTGCAACA CATGGCCGCG
ACCTTCCCTG ACCGCTTTGT CGCCAAGATG GGGCCGCAGA ACCGCGTGGG AAAAATCTTC
ATCGACTATC TGCGCAACAA CCGCGGTGCG AGCACGGTGG CCGCCTATTC GGTGCGCGCG
CGGACGGGGT TGCCAGTGTC CGTGCCGATC CGCCATGACG AGCTGGAAGG GCTGCAGTCG
TCTGCCCAGT GGACGCTGCG CACGCTGCCC GAACGGCTCG CCAAGCTCAA GGGCGATCCT
TGGGCCGCCT ATGCCGGTAC GCGTCAATCG GTCACGGCCG ACATGCGCAA ACGCGTTGGC
GCCGATGACT GA
 
Protein sequence
MPRHLADYRS KRDFTQTQEP AGARRKADEQ RDHGALHFVI QKHDATRLHY DFRLELDGTL 
KSWAVPKGPS LDPADKRLAV HVEDHPLDYA DFEGHIPEGQ YGGGDVIVWD RGTWRPHGDP
RKAYRDGKLK FDLHGEKLHG AWALVRTHLH GTGRHPKEQW LLIKERDDQV RASSDYDVTQ
ALPASVITGE NVGAKPKAKA DGRKTQRADP AQVQPPAGAV PGTLPKTLEP QLATLVDAPP
RQGEWNYEVK FDGYRILARI DGNTVRLFSR NGRDWTAKLP RQARTLQALG LREAWLDGEV
VVMGERGVPD FQALQNAFET AHAEHIAYYL FDIPFCNGMD LRGVPLRERR ALLERILDAA
PGNLDREAVL FSGTFHAAPE DLLSSACSMS LEGVIGKRAD APYRAGRSPA WIKLKCGQRQ
EFVIGGYSAP KGSRSGFGAL LLGVYDDAGK LRYAGRVGTG FNETSLHALH HELTGLTVDT
PPFANPPTGS DARDVQWVKP ERVAEIAFAE WTREGIVRQA VFQGLRDDKL ARNIVREQAK
PPSAAARKET RAVNAAERKV RPGAERIADV DVTHPDRVIE KASGTTKADL ARYYAGVAEW
MLPHLRNRPT SLVRAPDGID GERFFQKHSA ALKLQGITQL DPSLDPGHPS LLAINSAEAL
VGAVQMGTVE FHTWNALADR IEQPDRIVFD IDPDPALPFA RVIEATQLML AMLDELGLKA
FLKTSGGHGM HVVVLLTRRE AAGWDTLKTF AQAVVQHMAA TFPDRFVAKM GPQNRVGKIF
IDYLRNNRGA STVAAYSVRA RTGLPVSVPI RHDELEGLQS SAQWTLRTLP ERLAKLKGDP
WAAYAGTRQS VTADMRKRVG ADD