Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_0263 |
Symbol | |
ID | 6289265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | - |
Start bp | 277725 |
End bp | 279236 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642623834 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001897857 |
Protein GI | 187927370 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGT CGCTCCAGCT CCGTCTCTCT CAGCATCTCG CGCTCACGCC GCAGTTGCAG CAATCGATCC GACTGCTGCA GTTGTCGACC ATCGAACTGC AGCAGGAAGT TGAACAGGCC CTGACCGAAA ACCCGCTGCT GGAGCGGGAA AACGAGTGGC TCGACACCTC CGCCCGCATT GGAGCGGACG GCTCCTTGAA CGCGCTGCAA AGCAACAGCG CGACGCCCCT GCCCACCGAA TCGCCTCCGC CCGCACCCAA CGGCGGCGAC AGCAGCGACA GCTCGGACAG CAGCTACGAA AACGGCCACG ACAACGGTGC CGATTTCGAC AGCGATTACG GCTCCGACCG CTCCGACTGG AGCCTCGACG ACTTCGCCCG CAAGCCGCAA TCCGACGAAG ACGATCGCGC GCCACTGCAG TTGCGCGAAG CCGAGCAAAG CCTGCGCGAA TTCCTCATGG AACAACTCGC GCCGCTCAAG CTCTCGATGC GCGACAAGGG CCTCGTCATC TTCCTGATCG AATCGCTCGA CGACGAAGGT TATCTCTCAG GCACGCTCGA CGAAATCCTC GCAGACCTGC CGCCCGAACT CGAAGTCGAA CTCGACGAAC TGCAAGCCGC GCTGCGCATG CTGCAGAGCT TTGATCCGCC CGGCATTGGC GCGCGCTCAG CGGCCGAATG CCTGTCGTTG CAATTGCATC GGCTCGATTC GCCAGCGAAA GGGCTGGCGC TCATCATCGT TAATCAGCAC CTCGAACTGC TGGCCGCGCG CGACTACACG CGCTTGAAGA AGGCATTGTG CGTCGACGAA CCCACACTGA AAGCTGCGCA TGAGCTGATT CGTTCACTGG CACCGTTTCC GGGTCATGCA TTCGGCCGCG CCGAAGCGGA TTTCGTGGTG CCCGACGTGA TTGTGCGCAA GACAAGCGCA GGCTGGATGG CGCAACTGAA CCCCGACGTC ATGCCGCGGC TGCGCATCAA CGACATGTAC GCGCAGATCC TGCGCAGCAG CCGCGGTGAA TCGGGCGCTG CCAATCTGCA GCAGAAGCTG CAGGAAGCAC GTTGGCTGAT CAAGAACATC CAGCAGCGCT TCGATACGAT CCTGCGTGTC TCGCAAGCGA TTGTCGAGCG TCAAAAGAGC TTCTTCACGC ACGGCGAAAT CGCCATGCGC CCCTTGGTTT TGCGGGAAAT AGCCGATACA CTGGGTCTAC ACGAGTCCAC GATCTCCCGT GTGACAACGA ACAAATACAT GGCGACCCCG ATGGGGACGT TCGAGTTGAA GTACTTCTTC GGCAGCCATG TATCGACGGA AACCGGCGGG GCCGCGTCGT CCACTGCGAT ACGCGCGCTC ATCAAGCAAC TTGTAGGAGC CGAAGACCCG AAGAATCCTC TGTCCGATAG CAGAATTGCC GAGCTGTTAG GCGAACAAGG ATTCGTGGTG GCCCGTCGGA CGGTGGCCAA ATACCGCGAA GCCCTCAAGA TCCCTGCAGT GAATTTGCGC AAGTCTTTAT AG
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Protein sequence | MKQSLQLRLS QHLALTPQLQ QSIRLLQLST IELQQEVEQA LTENPLLERE NEWLDTSARI GADGSLNALQ SNSATPLPTE SPPPAPNGGD SSDSSDSSYE NGHDNGADFD SDYGSDRSDW SLDDFARKPQ SDEDDRAPLQ LREAEQSLRE FLMEQLAPLK LSMRDKGLVI FLIESLDDEG YLSGTLDEIL ADLPPELEVE LDELQAALRM LQSFDPPGIG ARSAAECLSL QLHRLDSPAK GLALIIVNQH LELLAARDYT RLKKALCVDE PTLKAAHELI RSLAPFPGHA FGRAEADFVV PDVIVRKTSA GWMAQLNPDV MPRLRINDMY AQILRSSRGE SGAANLQQKL QEARWLIKNI QQRFDTILRV SQAIVERQKS FFTHGEIAMR PLVLREIADT LGLHESTISR VTTNKYMATP MGTFELKYFF GSHVSTETGG AASSTAIRAL IKQLVGAEDP KNPLSDSRIA ELLGEQGFVV ARRTVAKYRE ALKIPAVNLR KSL
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