Gene Rpic_0168 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0168 
Symbol 
ID6287278 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp185574 
End bp186698 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content65% 
IMG OID642623739 
Productprotein of unknown function DUF140 
Protein accessionYP_001897763 
Protein GI187927276 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0767] ABC-type transport system involved in resistance to organic solvents, permease component 
TIGRFAM ID[TIGR00056] conserved hypothetical integral membrane protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.710497 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATCACCT TCCGTACACC GCAGCTTGAG GTGCGCGTTG TCGATGGACG CTCCGTCGCC 
TTTCTCTCTG GCGACTGGAC CACGCTTGCC CTGGCCGAAC GCGCCGGCGT GCGCAGCGCC
CGCCAGCAGA TCCGCGCCGG GCTGGACAAC GCCAACGCGT GGTGCCTGAC CGAAGTCGGC
CGTATCGACC ACTTTGGCGC GCAACTGCTC TGGCGTGCCT GGGGCAATCA GTGGCCCGAA
CATCTGGATG CCCGGCCCGA CCAGCGCCGC ATGCTCGATC GTGTTGCCAA GCTCGACCCC
GGCGGCTGGA AGCAGCGCCT GGCGCCCCGC ATGAACCCCG TGGCGATCCT CGGCGAGGGC
ATGCTCGATT TTTTCGATCA CGCGGGCAAT GGCATCGCCA TGGTCGGCCA GCTCGTGTTC
GACCTGGGCA GGTTCGTGCG CGCGCCGCAT CGCGGGCCGT GGCGCGAGAT CTCCGCCAAC
ATCTACAGCA CGGGCTACAA GGCGCTGGGC ATCACCGCGC TGGTGGGCTT CCTGATCGGC
ATCGTGCTCA GCTACCTGTC GGCCAACCAG TTGCGCGTAT TCGGGGCCAG CATCTTCATC
GTCAACATTT TGGGGATGGC CATCATCCGC GAGCTCGGGC CGGTGCTGGC GGCGATTCTG
GTGGCTGGGC GTTCGGGTTC AGCCATCACT GCGCAGATCG GCGTGATGCG CGTGACCGAA
GAGCTGGATG CGATGCGCGT GATGGGCATC TCGCACGGTT TCCGCCTGAT CCTGCCCAAG
GTGATTGCGC TGGCGATTGC CATGCCGCTG CTGGTGGCGT GGACGGATCT ACTCGCGCTG
GCGGGCGGTA TTCTCGCGGC CAAGTTCCAG CTCGACATCA GCCCGACGTA TTTCATCACC
TCGTTGCCCG ATGCTGTGCC GGTGGCCAAC CTGTGGCTCG GCATTGGCAA GGGCGTGGTG
TTTGGCATGC TGATCGCGCT GGTGGCCTGC CACTTCGGCC TGCGCATCCA GCCCAACACG
CAGAGCCTGG GCGAGGGCAC GACGACGTCC GTCGTGGTGT CGATCACCAT CGTCATCCTG
GCAGACGCGG TGTTTGCCAT CCTCTTCAAG GACGTCGGGA TATGA
 
Protein sequence
MITFRTPQLE VRVVDGRSVA FLSGDWTTLA LAERAGVRSA RQQIRAGLDN ANAWCLTEVG 
RIDHFGAQLL WRAWGNQWPE HLDARPDQRR MLDRVAKLDP GGWKQRLAPR MNPVAILGEG
MLDFFDHAGN GIAMVGQLVF DLGRFVRAPH RGPWREISAN IYSTGYKALG ITALVGFLIG
IVLSYLSANQ LRVFGASIFI VNILGMAIIR ELGPVLAAIL VAGRSGSAIT AQIGVMRVTE
ELDAMRVMGI SHGFRLILPK VIALAIAMPL LVAWTDLLAL AGGILAAKFQ LDISPTYFIT
SLPDAVPVAN LWLGIGKGVV FGMLIALVAC HFGLRIQPNT QSLGEGTTTS VVVSITIVIL
ADAVFAILFK DVGI