Gene Rpic_0116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0116 
Symbol 
ID6288015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp134385 
End bp136409 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content68% 
IMG OID642623687 
ProductCarbamoyl-phosphate synthase L chain ATP-binding 
Protein accessionYP_001897711 
Protein GI187927224 
COG category[I] Lipid transport and metabolism 
COG ID[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit 
TIGRFAM ID[TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCACCA AGCTCCTCAT CGCCAACCGA GGCGAAATCG CCTGCCGGGT CGCCGCCACC 
TGCCGCAAGC TCGGCATCCG CACGGTCGCG GTCTACTCCG ATGCCGACGC CAACGCCCGC
CACGTCGCGG CCTGCGACGA AGCCATCCAC ATCGGTGAGC CCGCCGCCCG CGACAGCTAC
CTCCGCGCTG ATCGCATCCT CGAAGCCGCA CGCGCCACGG GCGCGCAAGC CGTCCATCCC
GGCTACGGCT TCCTCTCAGA GAACGAAGCT TTCGCAAAAG CCTGCGCAGA CGCCGGCATC
ATCTTCGTCG GCCCGCCGGC CTCGGCCATC GAAGCGATGG GCAGCAAGAG CGCGGCCAAG
GCGCTGATGG AAACGGCGGG CGTGCCGCTC GTGCCCGGCT ACCACGGCGA CAACCAGGAC
GCGGCCTTCC TGCGCACGCA AGCCGATCGC ATCGGCTACC CCGTGCTCAT CAAGGCCAGC
GCCGGCGGCG GGGGCAAGGG CATGCGCGTG GTGGAGTCAG GCGATGCGTT CGAAGCCTCG
CTGGCTTCCG TCAAGCGCGA GGCGTCTTCC AGCTTCGGTG ACGACCGCGT ACTGATCGAG
AAGTACCTCA CGCGTCCGCG CCACATTGAA ATCCAGGTGT TTGCCGACAG CTTCGGCGAC
GCTGTCTATC TGTTCGAGCG CGACTGCTCT GTGCAGCGCC GCCACCAGAA GGTGCTGGAA
GAAGCCCCCG CCCCGGGCAT GACGCTGGAC CGCCGCCGCG CGATGGGCGA AGCGGCCGTG
GCGGCCGCGC GCGCCGTGGG CTACGTGGGC GCCGGCACGG TCGAGTTCAT CGTCGACGAA
GACGGCACGT TCTACTTCAT GGAGATGAAC ACGCGCCTGC AGGTCGAGCA CCCCGTGACC
GAAATGATCA CGGGCGAGGA CCTCGTCGAA TGGCAATTGC GCGTGGCATC CGGCGAGCCG
CTACCACGCA CGCAGGACGA GCTGCACATC CACGGCCATG CGCTCGAAGC ACGCATCTAC
GCCGAAAACC CCGACCGCGA TTTCCTGCCC TCCATCGGCA CGCTGAAGGT GCTGCGCACA
CCAGCGGCGG TGGAGTTCAC CGTAGGCGCG CAAGCCAATG GCGAACCGGC TGCCGTGCGC
ATCGATGCCG GCGTGCGTGA AGGCGACGCC ATCAGCCCGT ACTACGATCC GATGATCGCC
AAGCTCATCG TCTGGGGCCG TGACCGTGAA GAAGCGCTCG CGCGCATGCT GCAGGCGCTG
GGCAGCTTCC ACCTGGTGGG GCTGTCGTCC AACGTGGCTT TCCTGCGCCG CCTGGTCGCA
TCGAAGCCAT TTGCGACCGC CGATCTGGAT ACCGGCCTGA TCGCCCGCAA TCACGACACG
CTGTTCCCCG CTGCACCGGA CGTGCCGCTA GACGCCATCG CCCTGGCCGT GGCTGCGCTG
CTCGCCCGCG AGGCACGCAG CCTGCGCACC GACACGCGCG ATCCGCATTC GCCGTGGGCG
CGCGGCAGCG GCTGGCGCCT GAACGGCGCG GCTGAGCGCA CGCTGCGTTT CACGCATGGC
GATCAGTCCA TCGATGCCAC GCTCATCTAC GGCCGCTACG GCTCGCGACT GAAAGTTGGC
GGCAGCGAAG CGCCCTTCAC CTCACAGCGC CATGCAGAGA CCTTCACCGT CACGCTCGGC
ACGCACAAGG CGACCGGCCA GGTGCATGCC GATGGCGACA CGTTCCACGT CTTCACCGGC
GGTGCGCACT GGACGCTGGA GCGCCACGAC CCGCTCGCCC ATGCCGGCGA GGCCGACGAC
GAAGGCGGCA AGCTGACGGC GCCGATGCCC GGCAAGGTCA TCGCCGTGCT GGCCGCCCCG
GGGCAAACCG TCACCAAGGG CGCACCGCTG GTCGTCATGG AGGCCATGAA GATGGAGCAC
ACGCTCACGG CACCTGCCAA CGGCGTCGTC GAATCCGTGC TGTACGGCGT GGGCGATCAG
GTGACGGAAG GCGTGCAGTT GCTGGCGTTC AAGCCCGCCG AATGA
 
Protein sequence
MITKLLIANR GEIACRVAAT CRKLGIRTVA VYSDADANAR HVAACDEAIH IGEPAARDSY 
LRADRILEAA RATGAQAVHP GYGFLSENEA FAKACADAGI IFVGPPASAI EAMGSKSAAK
ALMETAGVPL VPGYHGDNQD AAFLRTQADR IGYPVLIKAS AGGGGKGMRV VESGDAFEAS
LASVKREASS SFGDDRVLIE KYLTRPRHIE IQVFADSFGD AVYLFERDCS VQRRHQKVLE
EAPAPGMTLD RRRAMGEAAV AAARAVGYVG AGTVEFIVDE DGTFYFMEMN TRLQVEHPVT
EMITGEDLVE WQLRVASGEP LPRTQDELHI HGHALEARIY AENPDRDFLP SIGTLKVLRT
PAAVEFTVGA QANGEPAAVR IDAGVREGDA ISPYYDPMIA KLIVWGRDRE EALARMLQAL
GSFHLVGLSS NVAFLRRLVA SKPFATADLD TGLIARNHDT LFPAAPDVPL DAIALAVAAL
LAREARSLRT DTRDPHSPWA RGSGWRLNGA AERTLRFTHG DQSIDATLIY GRYGSRLKVG
GSEAPFTSQR HAETFTVTLG THKATGQVHA DGDTFHVFTG GAHWTLERHD PLAHAGEADD
EGGKLTAPMP GKVIAVLAAP GQTVTKGAPL VVMEAMKMEH TLTAPANGVV ESVLYGVGDQ
VTEGVQLLAF KPAE