| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0096 |
|---|
| Symbol | |
|---|
| ID | 6288705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 112098 |
|---|
| End bp | 113081 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642623667 |
|---|
| Product | 2-nitropropane dioxygenase NPD |
|---|
| Protein accession | YP_001897691 |
|---|
| Protein GI | 187927204 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.396522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCCG CCAAGCACCT GCCGCCCGTG CTGCAGCACC TGACGCTGCC CGTGATCGGT
TCGCCGATGT TCATCGTCAG CTACCCGGAG CTGGTGCTGG CGCAATGCAA GGCCGGCATC
GTCGGGGCGT TTCCGGCGCT CAACGCGCGC CCAGCCGAGG TGCTGGACGC GTGGCTCACG
CAGATGAACG AGGACCTCGC TGCATACCGC GCCGCGCATC CGGACGCTGT GGTGGGACCG
ATCGCCGTCA ATCAAATCGT GCACCACTCA AACGCGCGGC TGGAGCAGGA CGTGGCCACG
TGCGTCAAGC ACAAGGTGCC GATCTTCATC ACGTCGCTGC GTGCGCCGGT CAAGGAGATC
CTCGATGCCG TGCACAGCTA CGGCGGCATC GTGCTGCACG ACGTGATCAA TCTGCGCCAT
GCGGAAAAGG CGCTGGAAGC CGGCGTCGAC GGGCTGATCC TGGTGGCTGC GGGTGCCGGT
GGGCATGCCG GTACGCTCTC GCCCTTTGCG CTGGTGGGCG AGGTGCGGCG CATCTTCGAC
GGGCCGATCG CGCTGTCGGG CGCCATTGCC ACGGGCGACG CCATCCTGGC CGCGCAGGCC
ATGGGCGCCG ACTTCGCCTA CATTGGCACA CGCTTCATCG CCAGCCAGGA GGCCCACGCC
GCCGAAAGCT ACAAGCAAGC CATCCTGCGC GCGGCCGCGT CGGACATCGT CTACACCAAC
CTCTTCACTG GTGTGCACGG CAACTACATC CGCGAAAGCA TCGAATTGGC CGGCCTGGAC
CCGGCCGCCC TGCCCGAGGC GGATAAATCG AAAATGAACT TTGGCGACGG CAGCTCGCGC
GCCAAGGCGT GGAAAGACAT CTGGGGTGCC GGCCAGGGCG TGGGTCAGAT TGCCGATCTG
CCGCCCGCCG CTGAAATCGT GGCGCGCATG AAGGCCGAGT ACGACGCGGC AAAGTTGCGT
CTTGCGCTGC ACCTGCGCCT CTAG
|
|---|
| Protein sequence | MPAAKHLPPV LQHLTLPVIG SPMFIVSYPE LVLAQCKAGI VGAFPALNAR PAEVLDAWLT
QMNEDLAAYR AAHPDAVVGP IAVNQIVHHS NARLEQDVAT CVKHKVPIFI TSLRAPVKEI
LDAVHSYGGI VLHDVINLRH AEKALEAGVD GLILVAAGAG GHAGTLSPFA LVGEVRRIFD
GPIALSGAIA TGDAILAAQA MGADFAYIGT RFIASQEAHA AESYKQAILR AAASDIVYTN
LFTGVHGNYI RESIELAGLD PAALPEADKS KMNFGDGSSR AKAWKDIWGA GQGVGQIADL
PPAAEIVARM KAEYDAAKLR LALHLRL
|
|---|
| |