| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0089 |
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| Symbol | |
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| ID | 6287811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 104095 |
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| End bp | 107382 |
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| Gene Length | 3288 bp |
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| Protein Length | 1095 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642623662 |
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| Product | methylmalonyl-CoA mutase, large subunit |
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| Protein accession | YP_001897686 |
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| Protein GI | 187927199 |
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| COG category | [E] Amino acid transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1703] Putative periplasmic protein kinase ArgK and related GTPases of G3E family
[COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit
[COG2185] Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.571974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATC TTTCCGCTGC CCGCGCGGCC GATCCCACGC CTGCCAGCGA ACCTGGGCCC
GCGCGCAACA AGGTGCGCTT CGTGACGGCC GCTTCGTTGT TCGATGGGCA TGACGCGTCG
ATCAACATCA TGCGGCGCAT CCTGCAGTCG ATGGGCTGCG AGGTGATCCA CCTCGGACAC
AACCGCTCGG TGGACGAGGT GGTGAACGCG GCATTGCAGG AAGACGTGCA GGGCATTGCC
GTGTCCAGCT ACCAGGGCGG CCACGTCGAA TACTTCAAGT ACATGATCGA CGCGCTGCGC
GCACGCGGCG GCGAGCACAT CCAGGTGTTC GGCGGCGGTG GCGGGGTGAT CGTGCCGGCG
GAGATCCGCG AACTGCAGGA CTACGGCGTC GCGCGCATCT ACAGCCCAGA AGACGGCCAG
CGCATGGGCC TGGCCGGCAT GATTGCCGAC ATGGTGCAGC GCTGCGATAT CGATCTCTCC
ATCCATGCGC CCGCTACCCT TGACCCGGTA GCCAATGGCG ACCGCCGTGC GCTGGCGCAA
TTGATCACCG CACTCGAGTC AGGCCGCATC GATCCGCCAT TGCGTGAAGC CGTACATGCG
GCTGCGGCAG CCACGCCGAC GCCGGTGCTC GGCATCACGG GCACGGGCGG CGCGGGCAAG
TCGTCGCTGA CCGATGAGTT GATCCGCCGC TTCCGGCTCG ACCAACAGGA CACGCTGCGC
ATCGCCGTCA TCTCGATCGA TCCGTCGCGG CGCAAGTCGG GCGGCGCGCT GTTGGGCGAT
CGCATTCGCA TGAACGCGAT CAACCATCCG AACATCTTCG TGCGCTCGCT GGCCACGCGG
GAGGCCAGCC GCGAGATCTC CGACGCGCTG CCCGATGTGA TTGCCGCATG CCGTGCCGCC
GGGTTCGATT TCATCATCGT CGAGACCTCC GGCATCGGGC AGGGCGATGC GGCCATCGTG
CCGCACGTCG ATTTGTCGCT GTACGTGATG ACGCCCGAGT TTGGCGCCGC CAGCCAGCTG
GAGAAGATCG ACATGCTCGA CTTTGCCGAT CTGGTGGCGA TCAACAAGTT CGACCGCAAG
GGCGCGCAGG ACGCCTGGCG CGACGTCGCC AAGCAGGTGC AGCGCAACCG CGAGCAATGG
CACGCCCGCC CCGAAGACAT GCCGGTGTTC GGCACGCAGG CCTCGCACTT CAACGACGAC
GGCGTGACGG CGCTGTATCA CGCGCTGGCC GATCGACTGA ACGAGCGGGG CATGGCGCTG
GCTGAACGCA CGCTGCCGCG CCCGGCCGGC AAATGCTCCA CCAGCCACGA CGCCATCGTG
CCTCCCGCGC GCGTTCGCTA TTTGGCGGAG CTGGCCGATA CCGTGCGCGG CTACCACCGC
CGCGTCGACG CGCAAAGCCG CCTCGCGCGC GAGCGCCAGC AGTTGCGTGC CAGCCACCGC
ATGCTGGAGC AGGCCGGCGC CACGGTGCAG ACGCTGTCCG CGCTCGACAA GCAGGCGGCC
GAGCGCGACG CGCAACTCGG CGCGGCCGAG CGCAAGCTGC TCGCCATGTG GCCTGACCTG
CGCCGCGCGT ATTCCGGCGA CGAATACGTC GTGAAGATCC GCGACAAGGA AATCCGCACG
CAGCTCACGC ACACCACGCT CTCCGGCACC ACCATCCGCA AGGTCGTACT GCCGCCGTAT
GAAGACGACG GCGAAGTGCT GCGCTGGCTG ATGCGCGAAA ACGTGCCGGG CAGCTTCCCG
TACACCGCCG GCGTGTTCGC CTTCAAGCGC GAGAACGAAG ACCCGACGCG CATGTTCGCG
GGCGAGGGCG ATGCCTTCCG CACCAACCGG CGCTTCAAGC TCGTCTCGGA AGGCATGGAG
GCCAAGCGGC TGTCCACCGC GTTCGACTCC GTCACGCTCT ACGGCGAAGA CCCGGCGCTG
CGCCCGGACA TCTACGGCAA GGTCGGCAAT TCGGGCGTCT CCATCGCCAC GCTCGACGAC
ATGGAAGTGC TGTACGACGG CTTTGATCTG ACCAGCCCTG CCACGTCGGT TTCCATGACG
ATCAACGGAC CGGCGCCGAC GATCCTGGCG ATGTTCATGA ACACCGCCAT CGACCAGAAT
CTCGCCCGGT TCCGTGCTGA CAACCAGCGC GAACCGACGC AGGACGAAGA GGCAAAGATC
CGCGCGTGGG TGCTGCAGAA CGTGCGCGGC ACGGTGCAGG CCGACATCCT CAAGGAAGAC
CAGGGGCAGA ACACCTGCAT CTTCTCGACG GAGTTTTCGC TCAAGGTGAT GGGCGATATC
CAGGAATATT TCGTGCACCA CCAGGTGCGC AATTTCTACT CGGTGTCGAT CTCGGGCTAC
CACATCGCCG AGGCGGGCGC CAACCCGATC TCGCAACTCG CATTCACGCT CGCCAACGGT
TTCACGTATG TGGAGGCGTA CCTCGCGCGC GGCATGCACA TCGATGACTT TGCGCCGAAC
CTGTCGTTCT TCTTCTCCAA CGGGATGGAC CCGGAATACA GCGTGCTCGG CCGTGTCGCG
CGCCGCATCT GGGCAGTGAC GCTACGAGAC AAATACGGCG CGAATGAGCG CAGTCAGAAG
CTGAAGTACC ACGTGCAGAC CTCGGGCCGA TCCCTGCACG CGCAGGAGAT TGCGTTCAAC
GATATCCGAA CGACGTTGCA GGCGCTGATC GCCATCTACG ACAACTGCAA CAGCCTGCAC
ACAAATGCCT ACGACGAGGC CATCACCACC CCGACGGCCG AATCCGTGCG GCGCGCCCTG
GCCATCCAGC TCATCATCAA TCGCGAGTGG GGCCTGGCCA AGTGCGAGAA CCCGAACCAG
GGCAGCTTCG TCATCGATGA ACTGACGGAC CTCGTGGAAG AAGCCGTGCT GCGGGAGTTT
GAACGCATTG CCGAGCGCGG CGGTGTGTTG GGGGCGATGG AAACCGGCTA CCAGCGCGGC
AGGATCCAGG AAGAGTCGAT GCTGTATGAG CAGCGCAAGC ACGATGGCTC GCTGCCGATC
ATCGGTGTGA ATACGTTCCG CAACCCAGAC GCCGATAGCG TGGTGCCGCC GCACATTGAA
CTGGCGCGTT CCAGCGAGGA AGAAAAGCAG AGCCAACTCG CGCGGCTGCA GGATTTTCAT
GCTCGGCATG CCGGGGAAGC CCCGGCCATG CTGCAGCGCC TGCAGCGCGC GGTGATTGAC
GATCAGAACG TGTTTGCGGT GCTGATGGAC GCGGTGCGGG TTTGCTCGCT GGGGCAGATC
ACGCATGCGT TGTTTGAGGT GGGGGGGCAG TATCGGCGGA ATATGTAG
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| Protein sequence | MTDLSAARAA DPTPASEPGP ARNKVRFVTA ASLFDGHDAS INIMRRILQS MGCEVIHLGH
NRSVDEVVNA ALQEDVQGIA VSSYQGGHVE YFKYMIDALR ARGGEHIQVF GGGGGVIVPA
EIRELQDYGV ARIYSPEDGQ RMGLAGMIAD MVQRCDIDLS IHAPATLDPV ANGDRRALAQ
LITALESGRI DPPLREAVHA AAAATPTPVL GITGTGGAGK SSLTDELIRR FRLDQQDTLR
IAVISIDPSR RKSGGALLGD RIRMNAINHP NIFVRSLATR EASREISDAL PDVIAACRAA
GFDFIIVETS GIGQGDAAIV PHVDLSLYVM TPEFGAASQL EKIDMLDFAD LVAINKFDRK
GAQDAWRDVA KQVQRNREQW HARPEDMPVF GTQASHFNDD GVTALYHALA DRLNERGMAL
AERTLPRPAG KCSTSHDAIV PPARVRYLAE LADTVRGYHR RVDAQSRLAR ERQQLRASHR
MLEQAGATVQ TLSALDKQAA ERDAQLGAAE RKLLAMWPDL RRAYSGDEYV VKIRDKEIRT
QLTHTTLSGT TIRKVVLPPY EDDGEVLRWL MRENVPGSFP YTAGVFAFKR ENEDPTRMFA
GEGDAFRTNR RFKLVSEGME AKRLSTAFDS VTLYGEDPAL RPDIYGKVGN SGVSIATLDD
MEVLYDGFDL TSPATSVSMT INGPAPTILA MFMNTAIDQN LARFRADNQR EPTQDEEAKI
RAWVLQNVRG TVQADILKED QGQNTCIFST EFSLKVMGDI QEYFVHHQVR NFYSVSISGY
HIAEAGANPI SQLAFTLANG FTYVEAYLAR GMHIDDFAPN LSFFFSNGMD PEYSVLGRVA
RRIWAVTLRD KYGANERSQK LKYHVQTSGR SLHAQEIAFN DIRTTLQALI AIYDNCNSLH
TNAYDEAITT PTAESVRRAL AIQLIINREW GLAKCENPNQ GSFVIDELTD LVEEAVLREF
ERIAERGGVL GAMETGYQRG RIQEESMLYE QRKHDGSLPI IGVNTFRNPD ADSVVPPHIE
LARSSEEEKQ SQLARLQDFH ARHAGEAPAM LQRLQRAVID DQNVFAVLMD AVRVCSLGQI
THALFEVGGQ YRRNM
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