| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0068 |
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| Symbol | |
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| ID | 6289591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | - |
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| Start bp | 82250 |
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| End bp | 84040 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642623641 |
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| Product | thiamine pyrophosphate protein TPP binding domain protein |
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| Protein accession | YP_001897665 |
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| Protein GI | 187927178 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.736165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGCCA CCGTCTGCGA TTTCCTCGTC GCCCGCCTGT ACGAGTGGGG CGTGCGGCGC
ATCTTTGGTT ACCCCGGCGA CGGCATCAAC GGCATGTTCG GGGCCCTGCA GCGCGCCGGC
GGCAAGATCG AGTTCGTTCA GGTGCGGCAT GAAGAGATGG CCGCCTTCAT GGCATCGGCG
CACGCCAAGT TCACCGGTGA GCTTGGCGTG TGCATGGCAA CGTCCGGGCC GGGTGCTGCG
CACCTGATCA CGGGCCTGTA CGACGCTCGG CTCGACCACA TGCCGGTGCT GGCGATTACC
GGGCAGCAGG CGCGCACCGC AGTCGGCGGG CACTACCAGC AGGAGGTGGA TCTGGCGGCG
ATGTTCCGCG ACGTGGCCGG CGCGTTTGTC CACCAGGCCA GCATGCCGGC GCAGGTGCGG
CACCTGCTGG ATCGCGCGGT ACGCATCGCC ATCGGGCAAC GCCGGGTGAC GGCGCTCGTG
CTGCCAAACG ATCTGCAGGA AATGCCCTAC ACCGAACCGC CGCGTGCGCA TGGCACGGTG
CACTCGGGCG TGGGCTACAG CGCGCCGAGC GTGATCCCGC AAGCCGCCGA CCTGGAACGC
GCAGCGGACA TCCTCAACAG CGGCCGCCGG GTGGCGATGC TCGTGGGCGC GGGCGCACTC
GGAGCCAGCG CGGAAGTGGC GGCCGTGGCG GAAACGCTGG GGGCGGGCGT GGCCAAGGCG
CTGCTCGGCA AGGCCGTGTT GCCCGACGAC CTGCCTTATG TGACAGGCGC CATCGGCCTG
CTCGGCACCG AGCCGAGCTG GGAGCTGATG AACCATTGCG ATACGCTGTT GATGGTCGGC
TCCGGCTTTC CGTACGCGGA GTTCCTGCCC AAGGAAGGCC AGGCGCGCGG TGTGCAGATC
GACCTGGACC CCGGCATGCT GGGGCTGCGC TATCCGATGG AGGTCAACCT CGTGGGCGAC
AGCGCGCAGA CGCTGCGTGC ACTGCTGCCG CTGCTCCAGC GCAAGACCGA TCCCTATTGG
CCCGACCGCA TTGCACGCTG GAATGAAAGC TGGTGGAAGA CGCTGGAAGA CCGCGCATTG
CAACCGGCCT ATCCCGTCAA CCCGCAGCAC GTGTTCTGGG AGCTGTCACC GAAGCTGCCG
GACGACGTGA TCGTCACGAG CGACTCCGGC ACCTGCGCCA ACTGGTATGC GCGCGATCTC
AAGTTCAAGC CCGGCATGAT GGGCTCGCTA TCGGGCGGGC TGGCATCGAT GGGGGCGGCG
GTGCCGTATG CGATTGCCGC CAAGTTTGCG CATCCCGAGC GCCCTGTCAT CGCACTGGTG
GGCGACGGCG CCATGCAGAT GAACAACATG GCGGAACTCA TCACCGTGTC GAAATACTGG
AAGCGCTGGA AGTCTTCCAA GTGGATCTGC ATGGTGCTCA ACAATCAGGA TCTGAACGAA
GTCACATGGG AGCAGCGCGT GATGGAAGGC GACCCGAAAT TCCCGGCGGC ACAGGACATC
CCGAACGTGC CGTATCACCG CTTTGCCGAA TTGATCGGGC TGAAGGGCAT CTACGTGGAC
AACCCCGACC AGCTGGCCGG CGCGTGGGAC GAAGCGCTCA ACGCCGACCG GCCCGTGGTG
CTGGAAGTGA AGACCGATCC CGATGTGCCG CCGCTGCCGC CCCACGTCAC GCTGCAGCAG
GCACGCAACT TTGCGACGGC ACTGGCGTAT GGCGACCCGG ATGCGAGCGG TGTGCTGCGC
GGGACGGCAC GGCAGGTGCT GTCGGCGCTG TTTCCGGTGC ATAAGGAATA G
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| Protein sequence | MQATVCDFLV ARLYEWGVRR IFGYPGDGIN GMFGALQRAG GKIEFVQVRH EEMAAFMASA
HAKFTGELGV CMATSGPGAA HLITGLYDAR LDHMPVLAIT GQQARTAVGG HYQQEVDLAA
MFRDVAGAFV HQASMPAQVR HLLDRAVRIA IGQRRVTALV LPNDLQEMPY TEPPRAHGTV
HSGVGYSAPS VIPQAADLER AADILNSGRR VAMLVGAGAL GASAEVAAVA ETLGAGVAKA
LLGKAVLPDD LPYVTGAIGL LGTEPSWELM NHCDTLLMVG SGFPYAEFLP KEGQARGVQI
DLDPGMLGLR YPMEVNLVGD SAQTLRALLP LLQRKTDPYW PDRIARWNES WWKTLEDRAL
QPAYPVNPQH VFWELSPKLP DDVIVTSDSG TCANWYARDL KFKPGMMGSL SGGLASMGAA
VPYAIAAKFA HPERPVIALV GDGAMQMNNM AELITVSKYW KRWKSSKWIC MVLNNQDLNE
VTWEQRVMEG DPKFPAAQDI PNVPYHRFAE LIGLKGIYVD NPDQLAGAWD EALNADRPVV
LEVKTDPDVP PLPPHVTLQQ ARNFATALAY GDPDASGVLR GTARQVLSAL FPVHKE
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