| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0048 |
|---|
| Symbol | |
|---|
| ID | 6287300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | - |
|---|
| Start bp | 60443 |
|---|
| End bp | 61636 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642623621 |
|---|
| Product | protein of unknown function DUF185 |
|---|
| Protein accession | YP_001897645 |
|---|
| Protein GI | 187927158 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1565] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.244588 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAA CCGTGAGTTT ACCGCTTCCC AACGAGGCGG CGCAGGCGCA GTCCGCGCAC
CTGTTCGCCG TGATCGCCGA CGCCATTGCG GCCGCCGGGG GCTGGCTTTC GTTCGACCGC
TACATGGAAC TGGCGCTTTA CGCGCCCGGC CTGGGCTATT ACAGCGGCGG CGCGGCCAAA
TTCGGCCGCC GCGTGGAGGA CGGCGGCGAC TTCATCACCG CGCCCGAACT GACGCCGTTC
TTCGGCCGCA CCGTGGCGCA CCAGCTCGCG CAGGTGCTGC AGGCATTGCC CGAAGGCCAG
CGTCACGTGC TGGAATTTGG CGCCGGCACC GGCAAGTTGG CCGCCGACAT CCTTATCGAA
TTGGATGCGC TGAGCGTGCG GCCCGACAGC TACGGCATCG TCGAACTCTC CGGCGAGCTG
CGCCAGCGCC AGCAGGAGCG TCTGACTGCG CTCGGCCCCG ACCTGGGCGC CCTGGCGCAG
TGGCACGACA CATTGCCCGC GCCGTTCACC GGCGTGATGA TCGGTAATGA AGTGCTCGAT
GCGATGCCCG TGTCGCTGTG GGCGCGGCGC GGCGGCATGT GGCACCAGCG CGGCGTGATG
CTAGATGCGG AGCACGGCCT GCAATGGGAA GACCGGCTTG TTGATCCGTC AGAGGTCCCA
GCCAAGCTGG CCGCCCTGCC CGGCACGGAT GATTTCGTTA CCGAATCGCA TGAGGCCGCC
GAGGGCTTCA TCCGCAGCAC CGGCGCAGCG CTTGAACGCG GCCTGCTGCT GCTGATCGAC
TACGGTTTCC CGGCTGCCGA GTACTACCAC GCGCACCGCG CCAACGGCAC GCTCATGTGC
CACTACCGCC AGCACGCGCA TGACGATCCG TTCTGGCTGC CAGGCCTGCA GGACATCACC
GCGCACGTCG ATTTTTCGGG GATTGCCCAG GCGGGACAGG AAGCCGGGCT GGAACTGCTC
GGCTACACGA GCCAGGCGCG CTTTCTGTTG AGCGCCGGCG TGGGTGAGCT GCTGATGACA
CTTGATCCGT CCGATCCGAT GCAGTTTCTG CCGGCGGCCA ATGCCGTGCA GAAACTGCTG
TCGGAAGCAG AAATGGGCGA GCTGTTCAAG GCCATCGCGC TGGGCAAAGG CATCGATGCA
GCACTGCCGC TGACCGGCTT TGCCGATGCC GACCGCTCGA ACCGCTTGGG TTAG
|
|---|
| Protein sequence | MSKTVSLPLP NEAAQAQSAH LFAVIADAIA AAGGWLSFDR YMELALYAPG LGYYSGGAAK
FGRRVEDGGD FITAPELTPF FGRTVAHQLA QVLQALPEGQ RHVLEFGAGT GKLAADILIE
LDALSVRPDS YGIVELSGEL RQRQQERLTA LGPDLGALAQ WHDTLPAPFT GVMIGNEVLD
AMPVSLWARR GGMWHQRGVM LDAEHGLQWE DRLVDPSEVP AKLAALPGTD DFVTESHEAA
EGFIRSTGAA LERGLLLLID YGFPAAEYYH AHRANGTLMC HYRQHAHDDP FWLPGLQDIT
AHVDFSGIAQ AGQEAGLELL GYTSQARFLL SAGVGELLMT LDPSDPMQFL PAANAVQKLL
SEAEMGELFK AIALGKGIDA ALPLTGFADA DRSNRLG
|
|---|
| |