| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_0039 |
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| Symbol | dapF |
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| ID | 6289735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010682 |
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| Strand | + |
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| Start bp | 51188 |
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| End bp | 52066 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642623612 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001897636 |
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| Protein GI | 187927149 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.258665 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGC ACTTCACCAA GATGCACGGC GCGGGCAACG ACTTTGTCGT GCTCGACGGC
ATCCAGACCC CGATCGACTT CACGCCCGAG CAATGGGCTG CCATTGCCGA CCGCCACTTC
GGCGTGGGGG CGGACCAGCT CCTGCTGGTC GAGCGTTCGA CACGGCCCGA TGTCGACTTC
CGTTACCGCA TCTTCAACCA CGACGGCGGC GAGGTGGAGC ACTGCGGTAA CGGCGCACGT
TGCTTCGTCA AGTTCGTCAC CGACCGCGGT TTGACCGACA AACGCACCGT GCGTGTGGAA
GTCATGAACG GCATCGCCAC GCTGACGATG CAGGACGACG GCCAGGTCAC AGTCGACATG
GGCGCACCGG TGTTCGAGGC GGCGCGCCTG CCGTTCCTGC CTGAAGGCCT GCCCACCCGC
ACCCAAGGCG ACGACACGCA GCACGCGCTG CAGATCAACG GCCGGACCGA ATGGCTGTCG
ACCGTGTCGA TGGGCAATCC GCACGCCGTG CAGATTGTCG ACGATACGGA AGCCTTCCCC
GTGCTGGAAG ATGGCCCGCT GATCGAATCG CATGCCGTGT TTCCGCGTCG CGTGAATGCG
GGCTTCATGC AGATCGTCGA TCGCCATTCC GTGCGCCTGC GCGTGTACGA GCGCGGCGCG
GGGGAGACGC TCGCCTGTGG CACCGGCGCG TGCGCAGCGG TGGTGGCCGG CATCCGCCGC
GGCCTGCTCG ATTCACCCGT CAAGGTGGCC ACGCACGGCG GCGACCTGAC CATCGCGTGG
GCGGGCGATG GCCAGCCGGT CATGATGACG GGCCCCGCCA CGACCGTGTT TGAAGGCACG
CTGGATCTGG ATGCGCTCAA GCTGACCGCT GCCCACTAG
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| Protein sequence | MKLHFTKMHG AGNDFVVLDG IQTPIDFTPE QWAAIADRHF GVGADQLLLV ERSTRPDVDF
RYRIFNHDGG EVEHCGNGAR CFVKFVTDRG LTDKRTVRVE VMNGIATLTM QDDGQVTVDM
GAPVFEAARL PFLPEGLPTR TQGDDTQHAL QINGRTEWLS TVSMGNPHAV QIVDDTEAFP
VLEDGPLIES HAVFPRRVNA GFMQIVDRHS VRLRVYERGA GETLACGTGA CAAVVAGIRR
GLLDSPVKVA THGGDLTIAW AGDGQPVMMT GPATTVFEGT LDLDALKLTA AH
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