Gene Bphyt_3770 details

Gene Information

• Locus tag: Bphyt_3770
• Symbol: fliF
• ID: 6284423
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia phytofirmans PsJN
• Kingdom: Bacteria
• Replicon accession: NC_010681
• Strand: +
• Start bp: 4221096
• End bp: 4222907
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642623357
• Product: flagellar MS-ring protein
• Protein accession: YP_001897382
• Protein GI: 187925740
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein
• TIGRFAM ID: [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 27
• Fosmid unclonability p-value: 0.448077
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGATTCGT CAGCCAACTC TTTGATCAAC CCCGACGCCC GCATGGGCCT CGCCGGTGCG 
CAGCCCGGCG CCGGTGCGGC CGGTGCCGGC CAGGCCGGCG GCGCAGCAGA CCTCGGCGGC 
CTGGGGAGCA ACCTCGGTGG CAACTTCGGT CAGCGCCTGT CCGGCCTCGC GCAGATGCGC 
GGCAACCCGC GCGCTCCGCT GATCTTCGCG GTGGCGCTGC TGGTCGCCGT GGTGGCGGGG 
CTGTTCCTGT GGTCGCGGGC GCCGGACTAC AAGGTGCTCT ACAGCAACCT GTCGGACCGC 
GACGGCGGCG CCATCATCAC GGCACTGCAG GCGGCCAACA TTCCCTACAA GTTCTCCGAC 
GCCGGCGGCG CGATCCTCGT GCCGGCCGAA CAGGTGCATG AAATGCGTCT GCGTCTGGCC 
TCGCAAGGCT TGCCCAAGAG CGGCTCGGTC GGCTTCGAAC TGATGGACAA CCAGAAGTTC 
GGCATCAGCC AGTTCGCCGA GCAGATCAAC TATCAGCGCG CGCTGGAAGG CGAACTGGAA 
CGCACGATCG AGTCGATTTC GTCGGTGAAG TCGGCGCGCG TGCATCTGGC GATTCCGAAG 
CCTTCCGTGT TCGTGCGCGA CAAGGAAGCG CCGTCGGCCT CCGTGCTGGT CAACCTTTAT 
CCGGGCCGCG CGCTCGACGA AGGCCAGGTG CTGGCGATCA CGCATATGGT GTCGTCGGCG 
GTGCCGGACA TGCCGGTGAA AGGCGTGACC ATCCTCGATC AGGACGGCAA CCTGTTGACG 
CAGCTGTCCA CCGGCAGCGG ACTCGACGCC TCGCAACTGA AGTACCGCCA GCAGATCGAG 
CGCAGCACCC AGCAGCGCAT CGACGCGATC CTCGCGCCCC TGTTCGGCTC GGGCAACGCG 
CATTCGCAGG TCAGCGCCGA TATCGACTTC TCGCACAGCG AGCAGACCTC GGAAAACTAC 
GGCCCGAACG GCAACCCGCA ACAGGCGGCG ATCCGCAGCC AGCAATCGAG CAGCGCCACC 
GAAATGTCGC AAGGCGCGGC CTCGGGCGTG CCGGGCGCGC TGTCGAACCA GCCGCCGCAG 
CCCGCATCGG CGCCGATCAA CGCGCCCAAC GGCGCGAGCG GCGTGACGAC CACGCCGGTC 
AGCGACCGCA AGGACTCGAC CACCAACTAC GAACTCGACA AGACGGTGCG TCATCTCGAA 
CGGCCGATGG GCGGCATCAA GCGTCTGTCG GTGGCGGTGG TGGTGAACTA TCTGCGTGTG 
GTCGACGCCA AGGGCCACGC CACGATGCAG CCGGTCACCG CCGACAAGCT CGCGCAGGTC 
AACCAGCTGG TGAAGGACGC GATGGGCTTC GACCAGGCGC GCGGCGACTC GGTCAACGTG 
GTCAACAGCC CGTTCAGCAC CGAGGTCGAT CCGAACGCCG ACCTGCCGTG GTGGCGCACG 
CCGGACATGA TTGCGCTCGC CAAGCAGATC GCGACTTACC TCGGCATCGG CGCGGTCGCC 
CTGTTCCTCT ACTTCGTGAT GGTGAAGCCG GCGCTGCGCC GCGCCTTCCC GCCGCCGGAG 
CCGGCCGCCG TCGCGGCGCT GGCGTCACCG GACGAGCCGA TTTTGCTGGA CGGCATTCCC 
GCCGCCGAGC GCATGGGCGC GAACGGCACC AGCAGCAGCG TCGCCGAACT GGAAGGCGAC 
AGCGAGCTGC TGGCGCTCGA AAGCGCCAAG CACAAATATG AGCGGAATCT GGAATTCGCG 
CGCAGCATCG CGCGCCAGGA TCCGAAGATC GTTGCAACCG TCGTGAAAAA TTGGGTGTCC 
GATGAGCGCT GA 

 

Protein sequence

MDSSANSLIN PDARMGLAGA QPGAGAAGAG QAGGAADLGG LGSNLGGNFG QRLSGLAQMR 
GNPRAPLIFA VALLVAVVAG LFLWSRAPDY KVLYSNLSDR DGGAIITALQ AANIPYKFSD 
AGGAILVPAE QVHEMRLRLA SQGLPKSGSV GFELMDNQKF GISQFAEQIN YQRALEGELE 
RTIESISSVK SARVHLAIPK PSVFVRDKEA PSASVLVNLY PGRALDEGQV LAITHMVSSA 
VPDMPVKGVT ILDQDGNLLT QLSTGSGLDA SQLKYRQQIE RSTQQRIDAI LAPLFGSGNA 
HSQVSADIDF SHSEQTSENY GPNGNPQQAA IRSQQSSSAT EMSQGAASGV PGALSNQPPQ 
PASAPINAPN GASGVTTTPV SDRKDSTTNY ELDKTVRHLE RPMGGIKRLS VAVVVNYLRV 
VDAKGHATMQ PVTADKLAQV NQLVKDAMGF DQARGDSVNV VNSPFSTEVD PNADLPWWRT 
PDMIALAKQI ATYLGIGAVA LFLYFVMVKP ALRRAFPPPE PAAVAALASP DEPILLDGIP 
AAERMGANGT SSSVAELEGD SELLALESAK HKYERNLEFA RSIARQDPKI VATVVKNWVS 
DER