| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3694 |
|---|
| Symbol | |
|---|
| ID | 6281278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4139386 |
|---|
| End bp | 4140351 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642623283 |
|---|
| Product | Helix-turn-helix type 11 domain protein |
|---|
| Protein accession | YP_001897308 |
|---|
| Protein GI | 187925666 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0509362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00000175857 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCGA GCCGACTTCT TTCTATCCTG ATGACGCTGC AGGCGCGTGG CCGCGTCACC
GCACAGTTCC TCGCCGATGA ATGCGCGGTG TCGTTGCGCA CCATCTATCG CGATATCGAC
GCCCTGAGCG CCGCCGGTGT CCCCGTTCAT AGCGAGCGTG GGGCGGAAGG CGGCTACCGC
CTGCTCGACG GCTACCGCAC ACGGCTGAAC GGCCTGTCCT CGCAGGAAGC GGAGTCGCTG
TTCCTCGCCG GCCTGCCCGG CCCGATGCAG GCGCTCGGCC TGGGCGCGGT GATGGCCGGT
GCGCAGACCA AGTTGCTGGC CGCGCTGCCG GTCGAATTAC GCTCCACCGC GGAGCGCATG
CGCTCGCGTT TTCATCTCGA CGCCCCCGCG TGGTTTTCGG ACGCGGACGA GCCCGCCCAT
CTGCCTTTGA TCGCGCGTGC GGTGTGGGAG CAGCATCCGC TGGAGATTCG CTATCAGAGC
TGGAAAGCCG AGAAGTTTCG CCGGATCGAA CCGCTTGGCA TCGTGCTAAA AAGCGGCGCG
TGGTATGTGG TCGGACGCGT GGGGCAGGAT TTGCGCATCT ATCGTATTTC GCGCATTCTC
GAAATAAGCC TGCTGGACGA GACGTTCGAG CGGCCGTGTG CGTTCGATCT CACCACTTAC
TGGCAGGACA GCACGCAGCG TCTCTCCGAG GAAATGCATG CGAGCGAAGC GACGCTGCGT
CTGTCGCCCT GGGGCATCCA GATGCTCGAT GTCTTCACGT CGCCGTTCGC GCGTTCGGCG
GCGATCATCG GTGAACCGGA TCCCAACGAT GGTTGGCGCA CCGTGACGCT GCCGGTCGGT
TCGGTTAGGC AGGCGTGCGC CGAGTTGCTG CGCTTCGGCA CTGAGGCAGA AGTGCTGGCG
CCACCCGAGT TGCGCGCCCG GATGTCGGAG GTTGCGGCGA CGCTGCATCG CCGTTATGCG
CAATGA
|
|---|
| Protein sequence | MRASRLLSIL MTLQARGRVT AQFLADECAV SLRTIYRDID ALSAAGVPVH SERGAEGGYR
LLDGYRTRLN GLSSQEAESL FLAGLPGPMQ ALGLGAVMAG AQTKLLAALP VELRSTAERM
RSRFHLDAPA WFSDADEPAH LPLIARAVWE QHPLEIRYQS WKAEKFRRIE PLGIVLKSGA
WYVVGRVGQD LRIYRISRIL EISLLDETFE RPCAFDLTTY WQDSTQRLSE EMHASEATLR
LSPWGIQMLD VFTSPFARSA AIIGEPDPND GWRTVTLPVG SVRQACAELL RFGTEAEVLA
PPELRARMSE VAATLHRRYA Q
|
|---|
| |