| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3652 |
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| Symbol | rpoB |
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| ID | 6283084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 4086531 |
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| End bp | 4090637 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642623232 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001897266 |
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| Protein GI | 187925624 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.220946 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00000667023 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAATATT CCTTCACCGA GAAGAAGCGT ATTCGCAAGA GTTTTGCGAA GCGCCCCATC
GTTCACCAAG TACCTTTCCT GCTGGCTACC CAGCTTGAAT CATTCAGCAC GTTTCTGCAA
GCAGACACGT CGTCCACGCA ACGCAAGCCG GAAGGCCTGC AAGCTGCGTT TACCTCCGTT
TTTCCGATTG TTTCGCATAA CGGGTTCGCT CGTCTAGAGT TCGTCAGCTA CATGCTGTCG
CCGCCGGCAT TCAACATCAA AGAATGTCAG CAGCGCGGTT TGACGTACTG CTCGGCGCTG
CGCGCGAAAG TGCGTCTGGT GCTGCTCGAC AAGGAATCGC CGAGCAAGCC GGTCGTCAAG
GAAGTGAAGG AACAGGAAGT GTACATGGGC GAAATTCCGC TCATGACGCC GACGGGTTCG
TTCGTCATCA ACGGCACGGA ACGTGTGATC GTTTCGCAGC TGCACCGTTC GCCGGGCGTG
TTCTTCGAAC ACGACAAGGG CAAGACGCAC AGCTCGGGCA AGCTCCTGTT CTCGGCACGT
ATCATTCCCT ACCGCGGTTC GTGGCTCGAT TTCGAGTTCG ACCCGAAGGA CGTGCTGTAC
TTCCGCGTCG ACCGTCGTCG CAAGATGCCG GTCACGATCC TGCTGAAGGC AATCGGCCTC
ACGCCGGAAC AGATCCTCGC AAACTTCTTC GTGTTCGATA ATTTCACGCT GATGCCGGAA
GGCGCGCAGA TGGAATTCGT GCCCGAGCGT CTGCGTGGTG AAGTCGCGCG TTTCGACATC
ACGGACCGTG ATGGCAACGT GATCGTCCAG AAGGACAAGC GGATCAACGC GAAGCACATT
CGCGACCTCG ACAACGCCAA GACCAAGTTC ATCTCGGTCC CGGAAGACTA TTTGCTCGGC
CGCGTGCTGG CAAAGAATGT CGTCGACGGC GACACGGGTG AAGTCATCGC CAACGCGAAC
GACGAAATCA CGGAAACCGT GCTCGAGAAG TTGCGCGAGT CGAAGATCAA AGACATCCAG
ACGCTCTATA CGAACGATCT GGATCAAGGT CCGTACATCT CGTCGACGCT GCGTATCGAC
GAAACCGCGG ACAAGATGGC CGCTCGCATC GCGATCTACC GCATGATGCG TCCGGGCGAA
CCGCCGACCG AAGAAGCGGT CGAGGCGCTG TTCAACCGTC TGTTCTACAG CGAAGACGCA
TACGACCTCT CGAAGGTGGG TCGTATGAAG TTCAATCGCC GTGTCGGCCG CGACGAAATC
GTCGGCCCGA TGACGCTGCA AGACGACGAC ATCCTCGCCA CGATCAAGAT CCTGGTCGAG
TTGCGTAACG GCAAGGGCGA AGTGGACGAC ATCGACCACT TGGGCAATCG TCGTGTGCGT
TGCGTGGGCG AACTGGCGGA AAACCAGTTC CGCGCAGGTC TCGTGCGTGT CGAACGTGCT
GTGAAGGAAC GTCTGGGTCA GGCCGAAAGC GAAAACCTGA TGCCGCACGA CCTGATCAAT
TCGAAGCCGA TTTCGTCGGC AATTCGCGAG TTCTTCGGTT CGTCGCAGCT GTCGCAGTTC
ATGGACCAGA CCAACCCGCT GTCGGAAATT ACCCACAAGC GCCGTGTTTC GGCTCTTGGC
CCGGGCGGTT TGACGCGTGA GCGCGCTGGC TTTGAAGTCC GCGACGTGCA CCCGACTCAT
TATGGTCGCG TGTGCCCGAT TGAAACGCCG GAAGGTCCGA ACATCGGCCT GATCAACTCA
CTCGCTCTGT ACGCGCACCT GAACGAATAC GGCTTCCTCG AAACGCCGTA TCGCAAGGTC
GTGGACAGCA AGGTGACCGA TCAGATCGAC TATCTGTCGG CGATCGAAGA GGGCCGTTAC
GTGATCGCTC AGGCGAACGC GGCGGTGGCG GAAGACGGCT CGCTGACCGA CGAACTGGTG
TCGTCGCGTG AAGCCGGCGA AACGCTGATG GTCACGCCGG ACCGCATCCA GTACATGGAC
GTGGCGCCGT CGCAAATCGT GTCGGTGGCA GCATCGCTGA TTCCGTTCCT CGAGCACGAT
GACGCGAACC GCGCATTGAT GGGTTCGAAC ATGCAGCGTC AGGCTGTGCC GTGTCTGCGT
CCTGAAAAGG CCGTGGTCGG GACGGGTATC GAGCGCACGG TGGCAGTCGA CTCGGGTACG
ACCGTTCAGG CATTCCGCGG CGGTGTGGTC GATTACGTCG ACGCGGGCCG TATGGTGATC
CGCGTGAACG ACGATGAAGC CGCGGCCGGC GAAACCGGCG TGGACATCTA CAACCTGATC
AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GCCCGATCGT AAAGGTCGGC
GACATCGTGT CGCGTGGCGA CGTGCTGGCT GATGGTGCAT CGACCGACCT CGGCGAACTG
GCTCTCGGCC AGAACATGCT GGTGGCGTTC ATGCCGTGGA ACGGCTACAA CTTCGAAGAC
TCGATTTTGA TCTCGGAGAA GGTGGTTGCG GACGACCGTT ACACGTCGAT CCACATCGAA
GAACTGAACG TCGTTGCTCG CGATACGAAG CTCGGACCGG AAGAAATCAC GCGCGACATC
TCGAACCTGG CTGAAGTGCA ACTCGGCCGT CTCGATGAGT CGGGCATCGT CTACATCGGC
GCTGAAGTCG AAGCGGGCGA CGTGCTGGTC GGCAAGGTCA CGCCGAAGGG CGAAACCCAG
CTGACGCCGG AAGAGAAGCT GCTGCGCGCG ATCTTCGGTG AAAAGGCTTC GGACGTGAAG
GACACGTCGC TGCGCGTGCC GTCGGGCATG AGCGGCACCG TGATCGACGT TCAAGTGTTC
ACGCGTGAAG GCATTCAGCG CGACAAGCGT GCGCAACAGA TCATCGACGA TGAACTGAAG
CGCTATCGCC TCGACCTGAA CGACCAGTTG CGTATCGTGG AAGGCGACGC GTTCCAGCGT
CTCGCACGTA TGCTCGACGG CAAGGTCGCG AACGGCGGTC CGAAGAAGCT GGCGAAGGGC
ACGAAGATCG AACAGGCTTA CCTGCAAGAT CTGGATCATT ACCACTGGTT CGACATCCGC
CTCGCGGACG AAGAAGCAGC GGCACAGCTC GAAGCCATCA AGGACTCGAT CGAACAGAAG
CGTCACCAGT TCGATCTGGC GTTCGAAGAA AAGCGCAAAA AGCTCACGCA AGGCGACGAA
CTGCCGCCGG GCGTGTTGAA GATGGTCAAG GTGTACCTGG CAGTCAAGCG CCGCCTGCAG
CCTGGCGACA AGATGGCCGG CCGTCACGGT AACAAGGGTG TCGTGTCGAA GATCGTTCCG
ATCGAAGACA TGCCGTACAT GGCCGACGGC CGTCCGGCTG ACGTCGTTCT GAACCCGCTC
GGCGTGCCGT CGCGGATGAA CGTGGGTCAG GTTCTCGAAG TGCATCTGGG TTGGGCCGCG
AAGGGTCTCG GCTGGCGTAT CGGCGAAATG CTGCAGCGTC AGGCGAAGAT CGCTGAACTG
CGCGAATTCC TGACCAAGAT CTACAACGAG TCGGGCCGCG CTGAAGAGCT GGACAGCTTC
ACGGACGACG AGATCGTCGA ACTGGCGAAG AACCTGCGCG AAGGCGTTCC GTTCGCTACG
CCGGTGTTCG ACGGCGCGAC GGAAGAAGAA ATGTCGCGCG CGCTGGATCT GGCATTCCCG
GACGACATCG CGAAGAACCT CGGCATGACG CCGTCGAAGA ATCAGGTGCG TCTGTACGAC
GGCCGCACGG GCGAAATGTT CGAACGTACG GTGACGGTCG GCTACATGCA CTACCTGAAG
CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGTTCCA CGGGCCCGTA CTCGCTCGTG
ACGCAGCAGC CGTTGGGCGG TAAGGCGCAA TTCGGTGGCC AGCGTTTCGG TGAAATGGAA
GTGTGGGCGC TCGAAGCGTA CGGCGCATCG TATGTGCTGC AGGAAATGCT GACGGTGAAG
TCGGACGACG TGACAGGCCG GACCAAGGTT TATGAAAACC TGGTCAAGGG CGATCACGTG
ATCGACGCCG GCATGCCGGA ATCCTTCAAC GTGTTGGTGA AGGAAATCCG CTCGCTCGGT
ATCGATATCG ACCTCGACCG CAACTAA
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| Protein sequence | MQYSFTEKKR IRKSFAKRPI VHQVPFLLAT QLESFSTFLQ ADTSSTQRKP EGLQAAFTSV
FPIVSHNGFA RLEFVSYMLS PPAFNIKECQ QRGLTYCSAL RAKVRLVLLD KESPSKPVVK
EVKEQEVYMG EIPLMTPTGS FVINGTERVI VSQLHRSPGV FFEHDKGKTH SSGKLLFSAR
IIPYRGSWLD FEFDPKDVLY FRVDRRRKMP VTILLKAIGL TPEQILANFF VFDNFTLMPE
GAQMEFVPER LRGEVARFDI TDRDGNVIVQ KDKRINAKHI RDLDNAKTKF ISVPEDYLLG
RVLAKNVVDG DTGEVIANAN DEITETVLEK LRESKIKDIQ TLYTNDLDQG PYISSTLRID
ETADKMAARI AIYRMMRPGE PPTEEAVEAL FNRLFYSEDA YDLSKVGRMK FNRRVGRDEI
VGPMTLQDDD ILATIKILVE LRNGKGEVDD IDHLGNRRVR CVGELAENQF RAGLVRVERA
VKERLGQAES ENLMPHDLIN SKPISSAIRE FFGSSQLSQF MDQTNPLSEI THKRRVSALG
PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLINS LALYAHLNEY GFLETPYRKV
VDSKVTDQID YLSAIEEGRY VIAQANAAVA EDGSLTDELV SSREAGETLM VTPDRIQYMD
VAPSQIVSVA ASLIPFLEHD DANRALMGSN MQRQAVPCLR PEKAVVGTGI ERTVAVDSGT
TVQAFRGGVV DYVDAGRMVI RVNDDEAAAG ETGVDIYNLI KYTRSNQNTN INQRPIVKVG
DIVSRGDVLA DGASTDLGEL ALGQNMLVAF MPWNGYNFED SILISEKVVA DDRYTSIHIE
ELNVVARDTK LGPEEITRDI SNLAEVQLGR LDESGIVYIG AEVEAGDVLV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGIQRDKR AQQIIDDELK
RYRLDLNDQL RIVEGDAFQR LARMLDGKVA NGGPKKLAKG TKIEQAYLQD LDHYHWFDIR
LADEEAAAQL EAIKDSIEQK RHQFDLAFEE KRKKLTQGDE LPPGVLKMVK VYLAVKRRLQ
PGDKMAGRHG NKGVVSKIVP IEDMPYMADG RPADVVLNPL GVPSRMNVGQ VLEVHLGWAA
KGLGWRIGEM LQRQAKIAEL REFLTKIYNE SGRAEELDSF TDDEIVELAK NLREGVPFAT
PVFDGATEEE MSRALDLAFP DDIAKNLGMT PSKNQVRLYD GRTGEMFERT VTVGYMHYLK
LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK
SDDVTGRTKV YENLVKGDHV IDAGMPESFN VLVKEIRSLG IDIDLDRN
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